Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 SBF1P1-201ENST00000444527 5631 ntBASIC15.62■□□□□ 0.09
CDH6P55285 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CDH6P55285 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CDH6P55285 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CDH6P55285 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
CDH6P55285 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CDH6P55285 AC098614.1-201ENST00000368528 745 ntBASIC15.62■□□□□ 0.09
CDH6P55285 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CDH6P55285 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC15.62■□□□□ 0.09
CDH6P55285 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CDH6P55285 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC15.62■□□□□ 0.09
CDH6P55285 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC15.62■□□□□ 0.09
CDH6P55285 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC15.62■□□□□ 0.09
CDH6P55285 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC15.62■□□□□ 0.09
CDH6P55285 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CDH6P55285 AC009486.1-201ENST00000569860 813 ntBASIC15.62■□□□□ 0.09
CDH6P55285 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC15.62■□□□□ 0.09
CDH6P55285 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC15.62■□□□□ 0.09
CDH6P55285 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
CDH6P55285 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC15.62■□□□□ 0.09
CDH6P55285 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC15.62■□□□□ 0.09
CDH6P55285 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
CDH6P55285 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
CDH6P55285 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CDH6P55285 MSTO2P-201ENST00000314835 1709 ntBASIC15.62■□□□□ 0.09
CDH6P55285 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
CDH6P55285 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC15.62■□□□□ 0.09
CDH6P55285 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CDH6P55285 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CDH6P55285 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC15.62■□□□□ 0.09
CDH6P55285 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CDH6P55285 MX1-218ENST00000619682 1980 ntTSL 5 BASIC15.62■□□□□ 0.09
CDH6P55285 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
CDH6P55285 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC15.62■□□□□ 0.09
CDH6P55285 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
CDH6P55285 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
CDH6P55285 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC15.61■□□□□ 0.09
CDH6P55285 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC15.61■□□□□ 0.09
CDH6P55285 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC15.61■□□□□ 0.09
CDH6P55285 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH6P55285 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CDH6P55285 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC15.61■□□□□ 0.09
CDH6P55285 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CDH6P55285 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH6P55285 BX640514.1-201ENST00000583223 1918 ntBASIC15.61■□□□□ 0.09
CDH6P55285 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CDH6P55285 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH6P55285 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH6P55285 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CDH6P55285 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH6P55285 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC15.61■□□□□ 0.09
CDH6P55285 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH6P55285 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CDH6P55285 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC15.61■□□□□ 0.09
CDH6P55285 APOA1-205ENST00000375329 927 ntTSL 2 BASIC15.61■□□□□ 0.09
CDH6P55285 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC15.61■□□□□ 0.09
CDH6P55285 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC15.61■□□□□ 0.09
CDH6P55285 AP006294.1-201ENST00000415407 339 ntBASIC15.61■□□□□ 0.09
CDH6P55285 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC15.61■□□□□ 0.09
CDH6P55285 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH6P55285 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CDH6P55285 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC15.61■□□□□ 0.09
CDH6P55285 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
CDH6P55285 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC15.61■□□□□ 0.09
CDH6P55285 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CDH6P55285 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC15.61■□□□□ 0.09
CDH6P55285 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC15.61■□□□□ 0.09
CDH6P55285 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CDH6P55285 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC15.61■□□□□ 0.09
CDH6P55285 AC025048.6-201ENST00000634326 1161 ntBASIC15.61■□□□□ 0.09
CDH6P55285 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC15.61■□□□□ 0.09
CDH6P55285 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC15.61■□□□□ 0.09
CDH6P55285 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH6P55285 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH6P55285 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH6P55285 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH6P55285 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH6P55285 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH6P55285 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH6P55285 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC15.61■□□□□ 0.09
CDH6P55285 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
CDH6P55285 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH6P55285 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC15.61■□□□□ 0.09
CDH6P55285 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
CDH6P55285 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC15.61■□□□□ 0.09
CDH6P55285 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH6P55285 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH6P55285 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH6P55285 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
CDH6P55285 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH6P55285 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CDH6P55285 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC15.6■□□□□ 0.09
CDH6P55285 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH6P55285 UCKL1-AS1-201ENST00000623569 3602 ntBASIC15.6■□□□□ 0.09
CDH6P55285 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CDH6P55285 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC15.6■□□□□ 0.09
CDH6P55285 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH6P55285 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC15.6■□□□□ 0.09
CDH6P55285 TK2-221ENST00000620035 5060 ntTSL 2 BASIC15.6■□□□□ 0.09
CDH6P55285 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms