Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC14.97□□□□□ -0.01
MSH3P20585 AC234783.1-201ENST00000441761 496 ntBASIC14.97□□□□□ -0.01
MSH3P20585 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC14.97□□□□□ -0.01
MSH3P20585 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC14.97□□□□□ -0.01
MSH3P20585 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC14.97□□□□□ -0.01
MSH3P20585 FTH1P14-201ENST00000482930 551 ntBASIC14.97□□□□□ -0.01
MSH3P20585 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
MSH3P20585 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC14.97□□□□□ -0.01
MSH3P20585 KRT17P8-201ENST00000540749 863 ntBASIC14.97□□□□□ -0.01
MSH3P20585 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC14.97□□□□□ -0.01
MSH3P20585 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC14.97□□□□□ -0.01
MSH3P20585 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC14.97□□□□□ -0.01
MSH3P20585 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC14.97□□□□□ -0.01
MSH3P20585 AC239800.4-201ENST00000603712 296 ntBASIC14.97□□□□□ -0.01
MSH3P20585 AL162274.1-201ENST00000617191 1098 ntBASIC14.97□□□□□ -0.01
MSH3P20585 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
MSH3P20585 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
MSH3P20585 AC005089.1-201ENST00000619486 2241 ntBASIC14.97□□□□□ -0.01
MSH3P20585 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC14.97□□□□□ -0.01
MSH3P20585 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC14.97□□□□□ -0.01
MSH3P20585 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
MSH3P20585 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC14.97□□□□□ -0.01
MSH3P20585 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
MSH3P20585 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
MSH3P20585 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
MSH3P20585 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
MSH3P20585 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC14.96□□□□□ -0.01
MSH3P20585 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC14.96□□□□□ -0.01
MSH3P20585 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
MSH3P20585 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
MSH3P20585 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
MSH3P20585 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC14.96□□□□□ -0.01
MSH3P20585 RER1-203ENST00000378513 3000 ntTSL 3 BASIC14.96□□□□□ -0.01
MSH3P20585 AC023908.3-201ENST00000564211 3047 ntBASIC14.96□□□□□ -0.01
MSH3P20585 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
MSH3P20585 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC14.96□□□□□ -0.01
MSH3P20585 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
MSH3P20585 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC14.96□□□□□ -0.01
MSH3P20585 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC14.96□□□□□ -0.01
MSH3P20585 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC14.96□□□□□ -0.01
MSH3P20585 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
MSH3P20585 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
MSH3P20585 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
MSH3P20585 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
MSH3P20585 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
MSH3P20585 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC14.96□□□□□ -0.01
MSH3P20585 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC14.96□□□□□ -0.01
MSH3P20585 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
MSH3P20585 AC007551.1-201ENST00000457394 519 ntBASIC14.96□□□□□ -0.01
MSH3P20585 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
MSH3P20585 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
MSH3P20585 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC14.96□□□□□ -0.01
MSH3P20585 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC14.96□□□□□ -0.01
MSH3P20585 RAB43P1-201ENST00000561790 589 ntBASIC14.96□□□□□ -0.01
MSH3P20585 AC106886.1-201ENST00000568660 600 ntBASIC14.96□□□□□ -0.01
MSH3P20585 AC025279.2-201ENST00000569730 653 ntBASIC14.96□□□□□ -0.01
MSH3P20585 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC14.96□□□□□ -0.01
MSH3P20585 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
MSH3P20585 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC14.96□□□□□ -0.01
MSH3P20585 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
MSH3P20585 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
MSH3P20585 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC14.96□□□□□ -0.01
MSH3P20585 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
MSH3P20585 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC14.96□□□□□ -0.02
MSH3P20585 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSH3P20585 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSH3P20585 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSH3P20585 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC14.95□□□□□ -0.02
MSH3P20585 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSH3P20585 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSH3P20585 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSH3P20585 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSH3P20585 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
MSH3P20585 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSH3P20585 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
MSH3P20585 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSH3P20585 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC14.95□□□□□ -0.02
MSH3P20585 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC14.95□□□□□ -0.02
MSH3P20585 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
MSH3P20585 TPM3P8-201ENST00000330554 643 ntBASIC14.95□□□□□ -0.02
MSH3P20585 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC14.95□□□□□ -0.02
MSH3P20585 GUK1-206ENST00000366723 845 ntTSL 5 BASIC14.95□□□□□ -0.02
MSH3P20585 BOLA2P3-201ENST00000404566 256 ntBASIC14.95□□□□□ -0.02
MSH3P20585 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC14.95□□□□□ -0.02
MSH3P20585 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC14.95□□□□□ -0.02
MSH3P20585 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC14.95□□□□□ -0.02
MSH3P20585 AC026434.2-201ENST00000506094 1078 ntBASIC14.95□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms