Protein–RNA interactions for Protein: O00203

AP3B1, AP-3 complex subunit beta-1, humanhuman

Predictions only

Length 1,094 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3B1O00203 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
AP3B1O00203 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
AP3B1O00203 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC15.19■□□□□ 0.02
AP3B1O00203 TSPY16P-201ENST00000449843 468 ntBASIC15.19■□□□□ 0.02
AP3B1O00203 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC15.19■□□□□ 0.02
AP3B1O00203 SERBP1P5-201ENST00000510079 1181 ntBASIC15.19■□□□□ 0.02
AP3B1O00203 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC15.19■□□□□ 0.02
AP3B1O00203 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
AP3B1O00203 SNX18-202ENST00000343017 3140 ntBASIC15.19■□□□□ 0.02
AP3B1O00203 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
AP3B1O00203 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC15.19■□□□□ 0.02
AP3B1O00203 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
AP3B1O00203 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC15.19■□□□□ 0.02
AP3B1O00203 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
AP3B1O00203 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
AP3B1O00203 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
AP3B1O00203 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
AP3B1O00203 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
AP3B1O00203 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
AP3B1O00203 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC15.19■□□□□ 0.02
AP3B1O00203 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC15.19■□□□□ 0.02
AP3B1O00203 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
AP3B1O00203 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP3B1O00203 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
AP3B1O00203 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC15.18■□□□□ 0.02
AP3B1O00203 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC15.18■□□□□ 0.02
AP3B1O00203 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP3B1O00203 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP3B1O00203 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP3B1O00203 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
AP3B1O00203 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP3B1O00203 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP3B1O00203 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP3B1O00203 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
AP3B1O00203 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
AP3B1O00203 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP3B1O00203 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC15.18■□□□□ 0.02
AP3B1O00203 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP3B1O00203 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP3B1O00203 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP3B1O00203 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC15.18■□□□□ 0.02
AP3B1O00203 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
AP3B1O00203 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC15.18■□□□□ 0.02
AP3B1O00203 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
AP3B1O00203 AC026434.2-201ENST00000506094 1078 ntBASIC15.18■□□□□ 0.02
AP3B1O00203 HNRNPA1P13-201ENST00000510646 963 ntBASIC15.18■□□□□ 0.02
AP3B1O00203 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
AP3B1O00203 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC15.18■□□□□ 0.02
AP3B1O00203 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC15.18■□□□□ 0.02
AP3B1O00203 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
AP3B1O00203 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
AP3B1O00203 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP3B1O00203 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
AP3B1O00203 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP3B1O00203 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP3B1O00203 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC15.18■□□□□ 0.02
AP3B1O00203 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP3B1O00203 SALL4P5-201ENST00000419001 1760 ntBASIC15.18■□□□□ 0.02
AP3B1O00203 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
AP3B1O00203 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP3B1O00203 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP3B1O00203 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
AP3B1O00203 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC15.18■□□□□ 0.02
AP3B1O00203 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP3B1O00203 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
AP3B1O00203 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
AP3B1O00203 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC15.17■□□□□ 0.02
AP3B1O00203 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
AP3B1O00203 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC15.17■□□□□ 0.02
AP3B1O00203 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
AP3B1O00203 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
AP3B1O00203 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
AP3B1O00203 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
AP3B1O00203 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC15.17■□□□□ 0.02
AP3B1O00203 API5-203ENST00000455725 2257 ntTSL 2 BASIC15.17■□□□□ 0.02
AP3B1O00203 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
AP3B1O00203 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
AP3B1O00203 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC15.17■□□□□ 0.02
AP3B1O00203 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
AP3B1O00203 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
AP3B1O00203 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
AP3B1O00203 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC15.17■□□□□ 0.02
AP3B1O00203 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
AP3B1O00203 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
AP3B1O00203 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
AP3B1O00203 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
AP3B1O00203 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC15.17■□□□□ 0.02
AP3B1O00203 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
AP3B1O00203 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC15.17■□□□□ 0.02
AP3B1O00203 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC15.17■□□□□ 0.02
AP3B1O00203 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
AP3B1O00203 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
AP3B1O00203 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
AP3B1O00203 INO80C-206ENST00000586489 594 ntTSL 3 BASIC15.17■□□□□ 0.02
AP3B1O00203 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC15.17■□□□□ 0.02
AP3B1O00203 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC15.17■□□□□ 0.02
AP3B1O00203 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
AP3B1O00203 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC15.17■□□□□ 0.02
AP3B1O00203 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
AP3B1O00203 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms