Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 RARRES2P9-201ENST00000565168 469 ntBASIC14.39□□□□□ -0.11
PDLIM1O00151 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM1O00151 AC093028.1-201ENST00000622998 982 ntBASIC14.39□□□□□ -0.11
PDLIM1O00151 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM1O00151 TRIB1-201ENST00000311922 3635 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM1O00151 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
PDLIM1O00151 PIAS1-202ENST00000545237 2932 ntTSL 2 BASIC14.39□□□□□ -0.11
PDLIM1O00151 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM1O00151 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
PDLIM1O00151 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM1O00151 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.39□□□□□ -0.11
PDLIM1O00151 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM1O00151 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM1O00151 TBCE-207ENST00000543662 2117 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
PDLIM1O00151 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
PDLIM1O00151 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC14.39□□□□□ -0.11
PDLIM1O00151 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
PDLIM1O00151 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM1O00151 NPTN-IT1-201ENST00000628401 2283 ntBASIC14.39□□□□□ -0.11
PDLIM1O00151 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM1O00151 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM1O00151 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM1O00151 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC14.38□□□□□ -0.11
PDLIM1O00151 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM1O00151 ZBED6CL-201ENST00000343855 2933 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
PDLIM1O00151 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
PDLIM1O00151 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
PDLIM1O00151 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM1O00151 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM1O00151 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM1O00151 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM1O00151 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC14.38□□□□□ -0.11
PDLIM1O00151 LINC01257-201ENST00000376678 2473 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM1O00151 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC14.38□□□□□ -0.11
PDLIM1O00151 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC14.38□□□□□ -0.11
PDLIM1O00151 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM1O00151 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM1O00151 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM1O00151 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC14.38□□□□□ -0.11
PDLIM1O00151 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC14.38□□□□□ -0.11
PDLIM1O00151 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
PDLIM1O00151 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC14.38□□□□□ -0.11
PDLIM1O00151 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
PDLIM1O00151 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM1O00151 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM1O00151 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM1O00151 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM1O00151 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM1O00151 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC14.38□□□□□ -0.11
PDLIM1O00151 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC14.38□□□□□ -0.11
PDLIM1O00151 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC14.38□□□□□ -0.11
PDLIM1O00151 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC14.38□□□□□ -0.11
PDLIM1O00151 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM1O00151 AC069262.1-201ENST00000539058 672 ntBASIC14.38□□□□□ -0.11
PDLIM1O00151 AC025678.2-201ENST00000562061 970 ntBASIC14.38□□□□□ -0.11
PDLIM1O00151 LSM12-202ENST00000585388 942 ntTSL 3 BASIC14.38□□□□□ -0.11
PDLIM1O00151 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC14.38□□□□□ -0.11
PDLIM1O00151 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM1O00151 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC14.38□□□□□ -0.11
PDLIM1O00151 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM1O00151 TVP23C-CDRT4-203ENST00000522212 2833 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
PDLIM1O00151 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
PDLIM1O00151 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM1O00151 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM1O00151 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
PDLIM1O00151 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM1O00151 IGHG1-202ENST00000390548 2619 ntAPPRIS P5 BASIC14.38□□□□□ -0.11
PDLIM1O00151 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM1O00151 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC14.38□□□□□ -0.11
PDLIM1O00151 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM1O00151 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
PDLIM1O00151 RPUSD4-201ENST00000298317 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM1O00151 SMPDL3B-202ENST00000373894 1878 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM1O00151 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM1O00151 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC14.37□□□□□ -0.11
PDLIM1O00151 AC114271.1-201ENST00000612689 2813 ntBASIC14.37□□□□□ -0.11
PDLIM1O00151 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM1O00151 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
PDLIM1O00151 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM1O00151 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM1O00151 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC14.37□□□□□ -0.11
PDLIM1O00151 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM1O00151 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
PDLIM1O00151 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM1O00151 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM1O00151 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM1O00151 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM1O00151 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM1O00151 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM1O00151 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
PDLIM1O00151 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM1O00151 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM1O00151 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM1O00151 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM1O00151 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC14.37□□□□□ -0.11
PDLIM1O00151 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC14.37□□□□□ -0.11
PDLIM1O00151 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC14.37□□□□□ -0.11
PDLIM1O00151 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC14.37□□□□□ -0.11
PDLIM1O00151 SLBP-205ENST00000488267 987 ntTSL 2 BASIC14.37□□□□□ -0.11
PDLIM1O00151 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 178.3 ms