Protein–RNA interactions for Protein: Q9Y3T6

R3HCC1, R3H and coiled-coil domain-containing protein 1, humanhuman

Known RBP Predictions only

Length 440 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
R3HCC1Q9Y3T6 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
R3HCC1Q9Y3T6 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
R3HCC1Q9Y3T6 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
R3HCC1Q9Y3T6 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
R3HCC1Q9Y3T6 INGX-202ENST00000489074 768 ntBASIC17.32■□□□□ 0.36
R3HCC1Q9Y3T6 FXR1-221ENST00000491674 365 ntTSL 2 BASIC17.32■□□□□ 0.36
R3HCC1Q9Y3T6 LY6E-204ENST00000519546 971 ntTSL 2 BASIC17.32■□□□□ 0.36
R3HCC1Q9Y3T6 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC17.32■□□□□ 0.36
R3HCC1Q9Y3T6 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
R3HCC1Q9Y3T6 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC17.32■□□□□ 0.36
R3HCC1Q9Y3T6 RAB34-223ENST00000636154 730 ntTSL 2 BASIC17.32■□□□□ 0.36
R3HCC1Q9Y3T6 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
R3HCC1Q9Y3T6 STK33-217ENST00000534493 1895 ntTSL 2 BASIC17.32■□□□□ 0.36
R3HCC1Q9Y3T6 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
R3HCC1Q9Y3T6 AC083964.2-201ENST00000623988 2396 ntBASIC17.32■□□□□ 0.36
R3HCC1Q9Y3T6 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
R3HCC1Q9Y3T6 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
R3HCC1Q9Y3T6 AL136982.4-201ENST00000437689 1740 ntBASIC17.32■□□□□ 0.36
R3HCC1Q9Y3T6 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC17.32■□□□□ 0.36
R3HCC1Q9Y3T6 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
R3HCC1Q9Y3T6 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
R3HCC1Q9Y3T6 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
R3HCC1Q9Y3T6 SH3TC2-202ENST00000502274 2681 ntTSL 2 BASIC17.32■□□□□ 0.36
R3HCC1Q9Y3T6 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
R3HCC1Q9Y3T6 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC17.32■□□□□ 0.36
R3HCC1Q9Y3T6 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
R3HCC1Q9Y3T6 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
R3HCC1Q9Y3T6 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
R3HCC1Q9Y3T6 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
R3HCC1Q9Y3T6 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
R3HCC1Q9Y3T6 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
R3HCC1Q9Y3T6 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC17.31■□□□□ 0.36
R3HCC1Q9Y3T6 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
R3HCC1Q9Y3T6 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
R3HCC1Q9Y3T6 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC17.31■□□□□ 0.36
R3HCC1Q9Y3T6 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
R3HCC1Q9Y3T6 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
R3HCC1Q9Y3T6 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
R3HCC1Q9Y3T6 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
R3HCC1Q9Y3T6 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC17.31■□□□□ 0.36
R3HCC1Q9Y3T6 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
R3HCC1Q9Y3T6 BANF1P1-201ENST00000553684 263 ntBASIC17.31■□□□□ 0.36
R3HCC1Q9Y3T6 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
R3HCC1Q9Y3T6 AL133215.2-201ENST00000609242 977 ntBASIC17.31■□□□□ 0.36
R3HCC1Q9Y3T6 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
R3HCC1Q9Y3T6 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
R3HCC1Q9Y3T6 TKT-202ENST00000423516 2075 ntTSL 2 BASIC17.31■□□□□ 0.36
R3HCC1Q9Y3T6 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
R3HCC1Q9Y3T6 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
R3HCC1Q9Y3T6 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC17.31■□□□□ 0.36
R3HCC1Q9Y3T6 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC17.31■□□□□ 0.36
R3HCC1Q9Y3T6 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
R3HCC1Q9Y3T6 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
R3HCC1Q9Y3T6 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
R3HCC1Q9Y3T6 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC17.31■□□□□ 0.36
R3HCC1Q9Y3T6 IMPDH1P4-201ENST00000445028 1534 ntBASIC17.31■□□□□ 0.36
R3HCC1Q9Y3T6 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
R3HCC1Q9Y3T6 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 KRT8P12-202ENST00000472924 1397 ntBASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 AL118506.1-201ENST00000601296 3082 ntBASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 RN7SL618P-201ENST00000477850 296 ntBASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 CCDC74BP1-201ENST00000508880 1123 ntBASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 CD99L2-205ENST00000437787 3493 ntTSL 2 BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 ZBTB45P2-201ENST00000452245 1531 ntBASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 FES-203ENST00000394302 2133 ntTSL 5 BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
R3HCC1Q9Y3T6 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms