Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 RPL28-203ENST00000428193 573 ntTSL 2 BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 RPL28-204ENST00000431533 590 ntTSL 2 BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 NEU3-203ENST00000529024 581 ntTSL 3 BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 RPL28-207ENST00000558815 616 ntTSL 2 BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 AC025279.2-201ENST00000569730 653 ntBASIC16.01■□□□□ 0.15
SIX2Q9NPC8 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 BX088702.1-201ENST00000610784 235 ntBASIC16.01■□□□□ 0.15
SIX2Q9NPC8 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 AP000593.2-201ENST00000542775 1433 ntBASIC16.01■□□□□ 0.15
SIX2Q9NPC8 WARS-203ENST00000358655 2466 ntTSL 2 BASIC16.01■□□□□ 0.15
SIX2Q9NPC8 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC16■□□□□ 0.15
SIX2Q9NPC8 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC16■□□□□ 0.15
SIX2Q9NPC8 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
SIX2Q9NPC8 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC16■□□□□ 0.15
SIX2Q9NPC8 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
SIX2Q9NPC8 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
SIX2Q9NPC8 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC16■□□□□ 0.15
SIX2Q9NPC8 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SIX2Q9NPC8 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16■□□□□ 0.15
SIX2Q9NPC8 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
SIX2Q9NPC8 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC16■□□□□ 0.15
SIX2Q9NPC8 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
SIX2Q9NPC8 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SIX2Q9NPC8 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SIX2Q9NPC8 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC16■□□□□ 0.15
SIX2Q9NPC8 AC098614.1-201ENST00000368528 745 ntBASIC16■□□□□ 0.15
SIX2Q9NPC8 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC16■□□□□ 0.15
SIX2Q9NPC8 AC092933.1-201ENST00000393644 945 ntBASIC16■□□□□ 0.15
SIX2Q9NPC8 RN7SKP175-201ENST00000408472 289 ntBASIC16■□□□□ 0.15
SIX2Q9NPC8 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC16■□□□□ 0.15
SIX2Q9NPC8 TMEM14DP-201ENST00000422205 345 ntBASIC16■□□□□ 0.15
SIX2Q9NPC8 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
SIX2Q9NPC8 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SIX2Q9NPC8 FTLP10-202ENST00000505798 471 ntBASIC16■□□□□ 0.15
SIX2Q9NPC8 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC16■□□□□ 0.15
SIX2Q9NPC8 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC16■□□□□ 0.15
SIX2Q9NPC8 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC16■□□□□ 0.15
SIX2Q9NPC8 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC16■□□□□ 0.15
SIX2Q9NPC8 AC106820.3-201ENST00000561653 397 ntBASIC16■□□□□ 0.15
SIX2Q9NPC8 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC16■□□□□ 0.15
SIX2Q9NPC8 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC16■□□□□ 0.15
SIX2Q9NPC8 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC16■□□□□ 0.15
SIX2Q9NPC8 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SIX2Q9NPC8 CICP16-201ENST00000502609 2813 ntBASIC16■□□□□ 0.15
SIX2Q9NPC8 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SIX2Q9NPC8 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SIX2Q9NPC8 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SIX2Q9NPC8 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SIX2Q9NPC8 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SIX2Q9NPC8 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
SIX2Q9NPC8 AL590440.2-201ENST00000641973 1595 ntBASIC16■□□□□ 0.15
SIX2Q9NPC8 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
SIX2Q9NPC8 FER1L4-210ENST00000615531 5998 ntBASIC16■□□□□ 0.15
SIX2Q9NPC8 AC005840.4-201ENST00000541242 2494 ntBASIC16■□□□□ 0.15
SIX2Q9NPC8 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 AC011498.7-201ENST00000624986 2027 ntBASIC15.99■□□□□ 0.15
SIX2Q9NPC8 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms