Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
IFT140Q96RY7 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
IFT140Q96RY7 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
IFT140Q96RY7 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC23.9■■□□□ 1.42
IFT140Q96RY7 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC23.9■■□□□ 1.42
IFT140Q96RY7 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
IFT140Q96RY7 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC23.9■■□□□ 1.42
IFT140Q96RY7 SIGLEC6-204ENST00000391797 1391 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
IFT140Q96RY7 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC23.9■■□□□ 1.42
IFT140Q96RY7 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
IFT140Q96RY7 SIRPB3P-201ENST00000340424 1216 ntBASIC23.9■■□□□ 1.42
IFT140Q96RY7 AP000244.1-201ENST00000424582 201 ntBASIC23.9■■□□□ 1.42
IFT140Q96RY7 MAGEA7P-201ENST00000436482 942 ntBASIC23.9■■□□□ 1.42
IFT140Q96RY7 AC025171.3-201ENST00000509036 472 ntTSL 2 BASIC23.9■■□□□ 1.42
IFT140Q96RY7 RN7SKP155-201ENST00000516031 288 ntBASIC23.9■■□□□ 1.42
IFT140Q96RY7 AC079414.2-201ENST00000567157 1104 ntBASIC23.9■■□□□ 1.42
IFT140Q96RY7 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC23.9■■□□□ 1.42
IFT140Q96RY7 MIR4265-201ENST00000582152 99 ntBASIC23.9■■□□□ 1.42
IFT140Q96RY7 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC23.9■■□□□ 1.42
IFT140Q96RY7 AC026336.4-201ENST00000624565 1050 ntBASIC23.9■■□□□ 1.42
IFT140Q96RY7 ESR1-214ENST00000638569 132 ntTSL 5 BASIC23.9■■□□□ 1.42
IFT140Q96RY7 AC139713.2-207ENST00000641556 1292 ntBASIC23.9■■□□□ 1.42
IFT140Q96RY7 AL662844.4-201ENST00000606367 2838 ntBASIC23.9■■□□□ 1.42
IFT140Q96RY7 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
IFT140Q96RY7 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
IFT140Q96RY7 AL139384.1-201ENST00000612143 3047 ntBASIC23.9■■□□□ 1.42
IFT140Q96RY7 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
IFT140Q96RY7 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
IFT140Q96RY7 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
IFT140Q96RY7 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC23.89■■□□□ 1.42
IFT140Q96RY7 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC23.89■■□□□ 1.42
IFT140Q96RY7 MANEA-202ENST00000369293 1076 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
IFT140Q96RY7 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
IFT140Q96RY7 SKOR2-201ENST00000400404 891 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.42
IFT140Q96RY7 AL121987.1-201ENST00000435580 645 ntTSL 3 BASIC23.89■■□□□ 1.42
IFT140Q96RY7 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC23.89■■□□□ 1.42
IFT140Q96RY7 TMEM222-203ENST00000464813 1071 ntTSL 2 BASIC23.89■■□□□ 1.42
IFT140Q96RY7 AC025594.1-201ENST00000469533 543 ntBASIC23.89■■□□□ 1.42
IFT140Q96RY7 AC005740.1-201ENST00000515639 522 ntBASIC23.89■■□□□ 1.42
IFT140Q96RY7 AC004801.1-201ENST00000549557 360 ntBASIC23.89■■□□□ 1.42
IFT140Q96RY7 CDIPT-AS1-202ENST00000565014 729 ntTSL 2 BASIC23.89■■□□□ 1.42
IFT140Q96RY7 AC005777.1-201ENST00000588332 187 ntBASIC23.89■■□□□ 1.42
IFT140Q96RY7 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC23.89■■□□□ 1.42
IFT140Q96RY7 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC23.89■■□□□ 1.42
IFT140Q96RY7 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC23.89■■□□□ 1.42
IFT140Q96RY7 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
IFT140Q96RY7 DKFZP434H168-201ENST00000567381 1905 ntBASIC23.89■■□□□ 1.42
IFT140Q96RY7 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
IFT140Q96RY7 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC23.89■■□□□ 1.41
IFT140Q96RY7 PDXDC2P-206ENST00000534700 1315 ntBASIC23.89■■□□□ 1.41
IFT140Q96RY7 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC23.89■■□□□ 1.41
IFT140Q96RY7 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC23.89■■□□□ 1.41
IFT140Q96RY7 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC23.89■■□□□ 1.41
IFT140Q96RY7 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC23.89■■□□□ 1.41
IFT140Q96RY7 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC23.89■■□□□ 1.41
IFT140Q96RY7 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC23.89■■□□□ 1.41
IFT140Q96RY7 LINC00303-203ENST00000427799 1028 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
IFT140Q96RY7 HFE-209ENST00000461397 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
IFT140Q96RY7 KHDRBS3-206ENST00000520981 1243 ntTSL 5 BASIC23.88■■□□□ 1.41
IFT140Q96RY7 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
IFT140Q96RY7 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC23.88■■□□□ 1.41
IFT140Q96RY7 NEK4P3-201ENST00000604859 544 ntBASIC23.88■■□□□ 1.41
IFT140Q96RY7 URAHP-205ENST00000610227 398 ntBASIC23.88■■□□□ 1.41
IFT140Q96RY7 CSTP2-201ENST00000610599 398 ntBASIC23.88■■□□□ 1.41
IFT140Q96RY7 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC23.88■■□□□ 1.41
IFT140Q96RY7 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
IFT140Q96RY7 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
IFT140Q96RY7 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC23.88■■□□□ 1.41
IFT140Q96RY7 AC010491.1-201ENST00000563101 2797 ntBASIC23.88■■□□□ 1.41
IFT140Q96RY7 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC23.88■■□□□ 1.41
IFT140Q96RY7 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC23.88■■□□□ 1.41
IFT140Q96RY7 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC23.88■■□□□ 1.41
IFT140Q96RY7 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
IFT140Q96RY7 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
IFT140Q96RY7 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
IFT140Q96RY7 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
IFT140Q96RY7 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
IFT140Q96RY7 LINP1-201ENST00000417112 917 ntTSL 2 BASIC23.87■■□□□ 1.41
IFT140Q96RY7 AL353658.1-201ENST00000436263 789 ntTSL 2 BASIC23.87■■□□□ 1.41
IFT140Q96RY7 RHOQP2-201ENST00000449922 579 ntBASIC23.87■■□□□ 1.41
IFT140Q96RY7 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC23.87■■□□□ 1.41
IFT140Q96RY7 BATF-202ENST00000555504 361 ntTSL 2 BASIC23.87■■□□□ 1.41
IFT140Q96RY7 MIR4746-201ENST00000579802 71 ntBASIC23.87■■□□□ 1.41
IFT140Q96RY7 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
IFT140Q96RY7 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC23.87■■□□□ 1.41
IFT140Q96RY7 AC006504.5-208ENST00000588784 2401 ntBASIC23.87■■□□□ 1.41
IFT140Q96RY7 HLF-202ENST00000430986 1385 ntTSL 2 BASIC23.87■■□□□ 1.41
IFT140Q96RY7 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC23.87■■□□□ 1.41
IFT140Q96RY7 CCL25-202ENST00000315626 450 ntTSL 2 BASIC23.87■■□□□ 1.41
IFT140Q96RY7 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC23.87■■□□□ 1.41
IFT140Q96RY7 AHCYP3-201ENST00000420053 1279 ntBASIC23.87■■□□□ 1.41
IFT140Q96RY7 AC113133.1-201ENST00000522388 1088 ntTSL 2 BASIC23.87■■□□□ 1.41
IFT140Q96RY7 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
IFT140Q96RY7 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC23.87■■□□□ 1.41
IFT140Q96RY7 AC012593.1-214ENST00000586952 767 ntTSL 5 BASIC23.87■■□□□ 1.41
IFT140Q96RY7 AL357143.1-203ENST00000639750 881 ntBASIC23.87■■□□□ 1.41
IFT140Q96RY7 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC23.87■■□□□ 1.41
IFT140Q96RY7 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC23.86■■□□□ 1.41
IFT140Q96RY7 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
IFT140Q96RY7 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC23.86■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms