Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC15.59■□□□□ 0.09
ATG4AQ8WYN0 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC15.59■□□□□ 0.09
ATG4AQ8WYN0 RPS15-202ENST00000585665 467 ntTSL 3 BASIC15.59■□□□□ 0.09
ATG4AQ8WYN0 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC15.59■□□□□ 0.09
ATG4AQ8WYN0 AC106028.4-201ENST00000614509 607 ntBASIC15.59■□□□□ 0.09
ATG4AQ8WYN0 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
ATG4AQ8WYN0 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
ATG4AQ8WYN0 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
ATG4AQ8WYN0 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
ATG4AQ8WYN0 AGGF1P1-201ENST00000509500 2073 ntBASIC15.59■□□□□ 0.09
ATG4AQ8WYN0 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
ATG4AQ8WYN0 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
ATG4AQ8WYN0 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
ATG4AQ8WYN0 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
ATG4AQ8WYN0 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
ATG4AQ8WYN0 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
ATG4AQ8WYN0 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
ATG4AQ8WYN0 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
ATG4AQ8WYN0 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
ATG4AQ8WYN0 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
ATG4AQ8WYN0 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
ATG4AQ8WYN0 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC15.59■□□□□ 0.09
ATG4AQ8WYN0 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
ATG4AQ8WYN0 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
ATG4AQ8WYN0 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
ATG4AQ8WYN0 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
ATG4AQ8WYN0 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
ATG4AQ8WYN0 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC15.58■□□□□ 0.09
ATG4AQ8WYN0 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC15.58■□□□□ 0.09
ATG4AQ8WYN0 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
ATG4AQ8WYN0 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
ATG4AQ8WYN0 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC15.58■□□□□ 0.09
ATG4AQ8WYN0 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.09
ATG4AQ8WYN0 PPP1R26P4-201ENST00000619065 3527 ntBASIC15.58■□□□□ 0.08
ATG4AQ8WYN0 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
ATG4AQ8WYN0 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
ATG4AQ8WYN0 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
ATG4AQ8WYN0 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
ATG4AQ8WYN0 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
ATG4AQ8WYN0 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
ATG4AQ8WYN0 AL645937.2-201ENST00000396808 931 ntBASIC15.58■□□□□ 0.08
ATG4AQ8WYN0 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC15.58■□□□□ 0.08
ATG4AQ8WYN0 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
ATG4AQ8WYN0 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
ATG4AQ8WYN0 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
ATG4AQ8WYN0 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC15.58■□□□□ 0.08
ATG4AQ8WYN0 SPDYE22P-201ENST00000582158 798 ntBASIC15.58■□□□□ 0.08
ATG4AQ8WYN0 MIR8072-201ENST00000614241 80 ntBASIC15.58■□□□□ 0.08
ATG4AQ8WYN0 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC15.58■□□□□ 0.08
ATG4AQ8WYN0 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC15.58■□□□□ 0.08
ATG4AQ8WYN0 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC15.58■□□□□ 0.08
ATG4AQ8WYN0 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
ATG4AQ8WYN0 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
ATG4AQ8WYN0 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
ATG4AQ8WYN0 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
ATG4AQ8WYN0 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
ATG4AQ8WYN0 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
ATG4AQ8WYN0 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
ATG4AQ8WYN0 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC15.58■□□□□ 0.08
ATG4AQ8WYN0 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
ATG4AQ8WYN0 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 MPV17-208ENST00000405076 603 ntTSL 5 BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 AC139530.3-201ENST00000620344 690 ntBASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms