Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC10.67□□□□□ -0.7
RPL39P62891 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC10.67□□□□□ -0.7
RPL39P62891 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC10.67□□□□□ -0.7
RPL39P62891 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 USP3-204ENST00000540797 5474 ntTSL 2 BASIC10.67□□□□□ -0.7
RPL39P62891 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC10.67□□□□□ -0.7
RPL39P62891 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC10.67□□□□□ -0.7
RPL39P62891 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC10.67□□□□□ -0.7
RPL39P62891 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC10.67□□□□□ -0.7
RPL39P62891 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC10.67□□□□□ -0.7
RPL39P62891 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC10.67□□□□□ -0.7
RPL39P62891 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 MIR1224-201ENST00000408193 85 ntBASIC10.67□□□□□ -0.7
RPL39P62891 AC074338.1-201ENST00000416825 156 ntBASIC10.67□□□□□ -0.7
RPL39P62891 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC10.67□□□□□ -0.7
RPL39P62891 FAAHP1-202ENST00000446499 1238 ntBASIC10.67□□□□□ -0.7
RPL39P62891 TIMM8BP1-201ENST00000452384 211 ntBASIC10.67□□□□□ -0.7
RPL39P62891 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC10.67□□□□□ -0.7
RPL39P62891 PTK7-212ENST00000476760 902 ntTSL 2 BASIC10.67□□□□□ -0.7
RPL39P62891 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC10.67□□□□□ -0.7
RPL39P62891 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC10.67□□□□□ -0.7
RPL39P62891 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC10.67□□□□□ -0.7
RPL39P62891 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC10.67□□□□□ -0.7
RPL39P62891 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC10.67□□□□□ -0.7
RPL39P62891 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 TBCB-211ENST00000589996 724 ntTSL 3 BASIC10.67□□□□□ -0.7
RPL39P62891 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC10.67□□□□□ -0.7
RPL39P62891 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC10.67□□□□□ -0.7
RPL39P62891 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 IRF5-214ENST00000613821 595 ntTSL 5 BASIC10.67□□□□□ -0.7
RPL39P62891 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 AC027612.1-201ENST00000445234 2395 ntBASIC10.67□□□□□ -0.7
RPL39P62891 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC10.67□□□□□ -0.7
RPL39P62891 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC10.67□□□□□ -0.7
RPL39P62891 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC10.67□□□□□ -0.7
RPL39P62891 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
RPL39P62891 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC10.67□□□□□ -0.7
RPL39P62891 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC10.67□□□□□ -0.7
RPL39P62891 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC10.66□□□□□ -0.7
RPL39P62891 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
RPL39P62891 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
RPL39P62891 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPL39P62891 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPL39P62891 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPL39P62891 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPL39P62891 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPL39P62891 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
RPL39P62891 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPL39P62891 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC10.66□□□□□ -0.7
RPL39P62891 AC018665.1-201ENST00000622927 1362 ntBASIC10.66□□□□□ -0.7
RPL39P62891 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
RPL39P62891 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
RPL39P62891 GRIN1-204ENST00000371553 3751 ntAPPRIS P4 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPL39P62891 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
RPL39P62891 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC10.66□□□□□ -0.7
RPL39P62891 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPL39P62891 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPL39P62891 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPL39P62891 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
RPL39P62891 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPL39P62891 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPL39P62891 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC10.66□□□□□ -0.7
RPL39P62891 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
RPL39P62891 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC10.66□□□□□ -0.7
RPL39P62891 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
RPL39P62891 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC10.66□□□□□ -0.7
RPL39P62891 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
RPL39P62891 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC10.66□□□□□ -0.7
RPL39P62891 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC10.66□□□□□ -0.7
RPL39P62891 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPL39P62891 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC10.66□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms