Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGCS2P54868 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGCS2P54868 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HMGCS2P54868 LINC01165-201ENST00000445190 1623 ntBASIC17.14■□□□□ 0.33
HMGCS2P54868 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC17.14■□□□□ 0.33
HMGCS2P54868 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGCS2P54868 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
HMGCS2P54868 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGCS2P54868 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGCS2P54868 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC17.13■□□□□ 0.33
HMGCS2P54868 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGCS2P54868 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC17.13■□□□□ 0.33
HMGCS2P54868 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC17.13■□□□□ 0.33
HMGCS2P54868 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGCS2P54868 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGCS2P54868 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC17.13■□□□□ 0.33
HMGCS2P54868 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGCS2P54868 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC17.13■□□□□ 0.33
HMGCS2P54868 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGCS2P54868 FAS-202ENST00000352159 1722 ntTSL 5 BASIC17.13■□□□□ 0.33
HMGCS2P54868 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC17.13■□□□□ 0.33
HMGCS2P54868 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGCS2P54868 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
HMGCS2P54868 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC17.13■□□□□ 0.33
HMGCS2P54868 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
HMGCS2P54868 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
HMGCS2P54868 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGCS2P54868 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC17.13■□□□□ 0.33
HMGCS2P54868 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGCS2P54868 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGCS2P54868 RPSAP31-201ENST00000416648 895 ntBASIC17.13■□□□□ 0.33
HMGCS2P54868 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGCS2P54868 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC17.13■□□□□ 0.33
HMGCS2P54868 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC17.13■□□□□ 0.33
HMGCS2P54868 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
HMGCS2P54868 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGCS2P54868 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC17.13■□□□□ 0.33
HMGCS2P54868 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGCS2P54868 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
HMGCS2P54868 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC17.13■□□□□ 0.33
HMGCS2P54868 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC17.13■□□□□ 0.33
HMGCS2P54868 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGCS2P54868 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGCS2P54868 YRDCP1-201ENST00000621419 643 ntBASIC17.13■□□□□ 0.33
HMGCS2P54868 AC092299.1-201ENST00000632679 757 ntBASIC17.13■□□□□ 0.33
HMGCS2P54868 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
HMGCS2P54868 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC17.13■□□□□ 0.33
HMGCS2P54868 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGCS2P54868 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGCS2P54868 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGCS2P54868 AC074138.1-201ENST00000611182 1303 ntBASIC17.13■□□□□ 0.33
HMGCS2P54868 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGCS2P54868 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGCS2P54868 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGCS2P54868 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGCS2P54868 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGCS2P54868 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGCS2P54868 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
HMGCS2P54868 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC17.12■□□□□ 0.33
HMGCS2P54868 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGCS2P54868 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGCS2P54868 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGCS2P54868 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGCS2P54868 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC17.12■□□□□ 0.33
HMGCS2P54868 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGCS2P54868 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC17.12■□□□□ 0.33
HMGCS2P54868 TMBIM7P-202ENST00000641474 1516 ntBASIC17.12■□□□□ 0.33
HMGCS2P54868 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGCS2P54868 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGCS2P54868 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGCS2P54868 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGCS2P54868 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGCS2P54868 SSR4P1-203ENST00000599569 2260 ntBASIC17.12■□□□□ 0.33
HMGCS2P54868 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGCS2P54868 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
HMGCS2P54868 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC17.12■□□□□ 0.33
HMGCS2P54868 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC17.12■□□□□ 0.33
HMGCS2P54868 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGCS2P54868 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGCS2P54868 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC17.12■□□□□ 0.33
HMGCS2P54868 AP000356.3-201ENST00000382243 753 ntBASIC17.12■□□□□ 0.33
HMGCS2P54868 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
HMGCS2P54868 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGCS2P54868 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGCS2P54868 DNAJB1P1-201ENST00000429417 1024 ntBASIC17.12■□□□□ 0.33
HMGCS2P54868 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC17.12■□□□□ 0.33
HMGCS2P54868 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC17.12■□□□□ 0.33
HMGCS2P54868 CFL1-206ENST00000527344 962 ntTSL 2 BASIC17.12■□□□□ 0.33
HMGCS2P54868 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGCS2P54868 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC17.12■□□□□ 0.33
HMGCS2P54868 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGCS2P54868 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC17.12■□□□□ 0.33
HMGCS2P54868 NAT9-220ENST00000582870 896 ntTSL 5 BASIC17.12■□□□□ 0.33
HMGCS2P54868 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGCS2P54868 AC138894.2-201ENST00000602838 371 ntBASIC17.12■□□□□ 0.33
HMGCS2P54868 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC17.12■□□□□ 0.33
HMGCS2P54868 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
HMGCS2P54868 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGCS2P54868 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGCS2P54868 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms