Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
SOX2P48431 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
SOX2P48431 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX2P48431 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
SOX2P48431 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX2P48431 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SOX2P48431 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SOX2P48431 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC13.29□□□□□ -0.28
SOX2P48431 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
SOX2P48431 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX2P48431 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC13.29□□□□□ -0.28
SOX2P48431 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SOX2P48431 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX2P48431 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX2P48431 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
SOX2P48431 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX2P48431 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SOX2P48431 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX2P48431 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX2P48431 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
SOX2P48431 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SOX2P48431 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
SOX2P48431 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SOX2P48431 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
SOX2P48431 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SOX2P48431 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC13.28□□□□□ -0.28
SOX2P48431 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC13.28□□□□□ -0.28
SOX2P48431 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC13.28□□□□□ -0.28
SOX2P48431 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC13.28□□□□□ -0.28
SOX2P48431 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SOX2P48431 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
SOX2P48431 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
SOX2P48431 AC055811.4-201ENST00000624039 1754 ntBASIC13.28□□□□□ -0.28
SOX2P48431 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
SOX2P48431 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SOX2P48431 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SOX2P48431 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SOX2P48431 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
SOX2P48431 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
SOX2P48431 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
SOX2P48431 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC13.28□□□□□ -0.28
SOX2P48431 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SOX2P48431 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC13.28□□□□□ -0.28
SOX2P48431 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SOX2P48431 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SOX2P48431 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SOX2P48431 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC13.28□□□□□ -0.28
SOX2P48431 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SOX2P48431 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SOX2P48431 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC13.28□□□□□ -0.28
SOX2P48431 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC13.28□□□□□ -0.28
SOX2P48431 AP000344.2-201ENST00000512987 629 ntBASIC13.28□□□□□ -0.28
SOX2P48431 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC13.28□□□□□ -0.28
SOX2P48431 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC13.28□□□□□ -0.28
SOX2P48431 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC13.28□□□□□ -0.28
SOX2P48431 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC13.28□□□□□ -0.28
SOX2P48431 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC13.28□□□□□ -0.28
SOX2P48431 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC13.28□□□□□ -0.28
SOX2P48431 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SOX2P48431 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC13.28□□□□□ -0.28
SOX2P48431 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC13.28□□□□□ -0.28
SOX2P48431 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SOX2P48431 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SOX2P48431 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
SOX2P48431 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SOX2P48431 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC13.28□□□□□ -0.28
SOX2P48431 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SOX2P48431 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SOX2P48431 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
SOX2P48431 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SOX2P48431 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC13.28□□□□□ -0.28
SOX2P48431 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
SOX2P48431 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SOX2P48431 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
SOX2P48431 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
SOX2P48431 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
SOX2P48431 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC13.27□□□□□ -0.28
SOX2P48431 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.28
SOX2P48431 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.28
SOX2P48431 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
SOX2P48431 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
SOX2P48431 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
SOX2P48431 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
SOX2P48431 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
SOX2P48431 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SOX2P48431 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SOX2P48431 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC13.27□□□□□ -0.29
SOX2P48431 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SOX2P48431 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
SOX2P48431 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC13.27□□□□□ -0.29
SOX2P48431 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
SOX2P48431 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
SOX2P48431 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC13.27□□□□□ -0.29
SOX2P48431 TOMM22P5-201ENST00000416399 439 ntBASIC13.27□□□□□ -0.29
SOX2P48431 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
SOX2P48431 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC13.27□□□□□ -0.29
SOX2P48431 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC13.27□□□□□ -0.29
SOX2P48431 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC13.27□□□□□ -0.29
SOX2P48431 DNAJB3-201ENST00000446806 729 ntBASIC13.27□□□□□ -0.29
SOX2P48431 AC023141.5-201ENST00000458585 616 ntBASIC13.27□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 65.3 ms