Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC13.1□□□□□ -0.31
COL8A1P27658 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL8A1P27658 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC13.1□□□□□ -0.31
COL8A1P27658 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
COL8A1P27658 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL8A1P27658 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
COL8A1P27658 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
COL8A1P27658 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL8A1P27658 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL8A1P27658 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL8A1P27658 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL8A1P27658 AC022188.1-201ENST00000620960 1664 ntBASIC13.1□□□□□ -0.31
COL8A1P27658 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL8A1P27658 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC13.1□□□□□ -0.31
COL8A1P27658 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
COL8A1P27658 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL8A1P27658 B9D1-203ENST00000395615 805 ntTSL 3 BASIC13.1□□□□□ -0.31
COL8A1P27658 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
COL8A1P27658 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC13.1□□□□□ -0.31
COL8A1P27658 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL8A1P27658 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC13.1□□□□□ -0.31
COL8A1P27658 AC026320.2-201ENST00000434379 478 ntBASIC13.1□□□□□ -0.31
COL8A1P27658 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC13.1□□□□□ -0.31
COL8A1P27658 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC13.1□□□□□ -0.31
COL8A1P27658 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC13.1□□□□□ -0.31
COL8A1P27658 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC13.1□□□□□ -0.31
COL8A1P27658 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC13.1□□□□□ -0.31
COL8A1P27658 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
COL8A1P27658 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC13.1□□□□□ -0.31
COL8A1P27658 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC13.1□□□□□ -0.31
COL8A1P27658 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
COL8A1P27658 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC13.1□□□□□ -0.31
COL8A1P27658 MIR3677-201ENST00000578964 60 ntBASIC13.1□□□□□ -0.31
COL8A1P27658 MYB-201ENST00000316528 3571 ntTSL 5 BASIC13.1□□□□□ -0.31
COL8A1P27658 MYB-241ENST00000616088 3573 ntTSL 5 BASIC13.1□□□□□ -0.31
COL8A1P27658 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL8A1P27658 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
COL8A1P27658 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC13.1□□□□□ -0.31
COL8A1P27658 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
COL8A1P27658 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL8A1P27658 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC13.1□□□□□ -0.31
COL8A1P27658 AC092171.3-201ENST00000610122 2651 ntBASIC13.1□□□□□ -0.31
COL8A1P27658 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC13.1□□□□□ -0.31
COL8A1P27658 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC13.1□□□□□ -0.31
COL8A1P27658 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
COL8A1P27658 FKBP4P6-201ENST00000457486 1332 ntBASIC13.1□□□□□ -0.31
COL8A1P27658 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC13.1□□□□□ -0.31
COL8A1P27658 AL513523.2-202ENST00000427283 2040 ntBASIC13.1□□□□□ -0.31
COL8A1P27658 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL8A1P27658 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL8A1P27658 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC13.1□□□□□ -0.31
COL8A1P27658 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL8A1P27658 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL8A1P27658 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL8A1P27658 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL8A1P27658 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC13.09□□□□□ -0.31
COL8A1P27658 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
COL8A1P27658 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC13.09□□□□□ -0.31
COL8A1P27658 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
COL8A1P27658 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC13.09□□□□□ -0.31
COL8A1P27658 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL8A1P27658 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL8A1P27658 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL8A1P27658 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL8A1P27658 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC13.09□□□□□ -0.31
COL8A1P27658 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL8A1P27658 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL8A1P27658 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
COL8A1P27658 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
COL8A1P27658 AC078925.2-201ENST00000624013 1973 ntBASIC13.09□□□□□ -0.31
COL8A1P27658 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL8A1P27658 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL8A1P27658 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC13.09□□□□□ -0.31
COL8A1P27658 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
COL8A1P27658 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
COL8A1P27658 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL8A1P27658 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL8A1P27658 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC13.09□□□□□ -0.31
COL8A1P27658 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL8A1P27658 AC239868.1-201ENST00000369385 493 ntBASIC13.09□□□□□ -0.31
COL8A1P27658 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
COL8A1P27658 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL8A1P27658 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC13.09□□□□□ -0.31
COL8A1P27658 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
COL8A1P27658 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL8A1P27658 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
COL8A1P27658 RPL18AP3-201ENST00000462885 528 ntBASIC13.09□□□□□ -0.31
COL8A1P27658 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
COL8A1P27658 HLA-J-204ENST00000495278 958 ntBASIC13.09□□□□□ -0.31
COL8A1P27658 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC13.09□□□□□ -0.31
COL8A1P27658 AC022616.1-201ENST00000518688 554 ntBASIC13.09□□□□□ -0.31
COL8A1P27658 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC13.09□□□□□ -0.31
COL8A1P27658 AC012158.2-201ENST00000536546 354 ntBASIC13.09□□□□□ -0.31
COL8A1P27658 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC13.09□□□□□ -0.31
COL8A1P27658 TPM1-223ENST00000560445 485 ntTSL 3 BASIC13.09□□□□□ -0.31
COL8A1P27658 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
COL8A1P27658 AL118516.1-201ENST00000564152 670 ntBASIC13.09□□□□□ -0.31
COL8A1P27658 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC13.09□□□□□ -0.31
COL8A1P27658 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC13.09□□□□□ -0.31
COL8A1P27658 BX547991.1-201ENST00000582543 1206 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms