Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC14.3□□□□□ -0.12
SDC1P18827 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC14.3□□□□□ -0.12
SDC1P18827 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC14.3□□□□□ -0.12
SDC1P18827 HNRNPA1P13-201ENST00000510646 963 ntBASIC14.3□□□□□ -0.12
SDC1P18827 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC14.3□□□□□ -0.12
SDC1P18827 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
SDC1P18827 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC14.3□□□□□ -0.12
SDC1P18827 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC14.3□□□□□ -0.12
SDC1P18827 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC14.3□□□□□ -0.12
SDC1P18827 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
SDC1P18827 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC14.3□□□□□ -0.12
SDC1P18827 AL132655.2-201ENST00000596276 594 ntBASIC14.3□□□□□ -0.12
SDC1P18827 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC14.3□□□□□ -0.12
SDC1P18827 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC14.3□□□□□ -0.12
SDC1P18827 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
SDC1P18827 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC14.3□□□□□ -0.12
SDC1P18827 AC005252.2-201ENST00000624630 1141 ntBASIC14.3□□□□□ -0.12
SDC1P18827 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SDC1P18827 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SDC1P18827 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
SDC1P18827 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SDC1P18827 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SDC1P18827 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SDC1P18827 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SDC1P18827 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
SDC1P18827 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SDC1P18827 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC14.3□□□□□ -0.12
SDC1P18827 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
SDC1P18827 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SDC1P18827 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SDC1P18827 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
SDC1P18827 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC14.3□□□□□ -0.12
SDC1P18827 BANP-203ENST00000393207 2438 ntTSL 2 BASIC14.3□□□□□ -0.12
SDC1P18827 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
SDC1P18827 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SDC1P18827 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
SDC1P18827 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
SDC1P18827 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SDC1P18827 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC14.29□□□□□ -0.12
SDC1P18827 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
SDC1P18827 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
SDC1P18827 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
SDC1P18827 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.29□□□□□ -0.12
SDC1P18827 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SDC1P18827 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC14.29□□□□□ -0.12
SDC1P18827 AC092135.3-201ENST00000624151 1846 ntBASIC14.29□□□□□ -0.12
SDC1P18827 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
SDC1P18827 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SDC1P18827 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC14.29□□□□□ -0.12
SDC1P18827 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
SDC1P18827 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SDC1P18827 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SDC1P18827 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SDC1P18827 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
SDC1P18827 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
SDC1P18827 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SDC1P18827 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SDC1P18827 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
SDC1P18827 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SDC1P18827 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC14.29□□□□□ -0.12
SDC1P18827 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC14.29□□□□□ -0.12
SDC1P18827 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
SDC1P18827 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
SDC1P18827 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC14.29□□□□□ -0.12
SDC1P18827 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
SDC1P18827 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC14.29□□□□□ -0.12
SDC1P18827 CHCHD2P3-201ENST00000603038 451 ntBASIC14.29□□□□□ -0.12
SDC1P18827 TMEM261P1-201ENST00000604899 340 ntBASIC14.29□□□□□ -0.12
SDC1P18827 GPALPP1-207ENST00000611650 899 ntBASIC14.29□□□□□ -0.12
SDC1P18827 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC14.29□□□□□ -0.12
SDC1P18827 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC14.29□□□□□ -0.12
SDC1P18827 HFE2-206ENST00000634927 506 ntTSL 4 BASIC14.29□□□□□ -0.12
SDC1P18827 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SDC1P18827 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SDC1P18827 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SDC1P18827 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
SDC1P18827 USP4-203ENST00000415188 1454 ntTSL 3 BASIC14.29□□□□□ -0.12
SDC1P18827 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC14.29□□□□□ -0.12
SDC1P18827 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SDC1P18827 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
SDC1P18827 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SDC1P18827 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SDC1P18827 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
SDC1P18827 AC097376.2-205ENST00000610159 5334 ntBASIC14.29□□□□□ -0.12
SDC1P18827 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SDC1P18827 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
SDC1P18827 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC14.29□□□□□ -0.12
SDC1P18827 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC14.29□□□□□ -0.12
SDC1P18827 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC14.29□□□□□ -0.12
SDC1P18827 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC14.29□□□□□ -0.12
SDC1P18827 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
SDC1P18827 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
SDC1P18827 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
SDC1P18827 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SDC1P18827 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDC1P18827 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDC1P18827 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDC1P18827 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDC1P18827 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDC1P18827 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms