Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 PCDHGB8P-201ENST00000502926 1973 ntBASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM39Q9HCM9 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
TRIM39Q9HCM9 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
TRIM39Q9HCM9 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
TRIM39Q9HCM9 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.02
TRIM39Q9HCM9 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.02
TRIM39Q9HCM9 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC14.96□□□□□ -0.02
TRIM39Q9HCM9 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
TRIM39Q9HCM9 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC14.96□□□□□ -0.02
TRIM39Q9HCM9 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
TRIM39Q9HCM9 ZBED1P1-201ENST00000502364 1930 ntBASIC14.96□□□□□ -0.02
TRIM39Q9HCM9 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
TRIM39Q9HCM9 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
TRIM39Q9HCM9 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 BANP-203ENST00000393207 2438 ntTSL 2 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 STX1A-203ENST00000395155 783 ntTSL 2 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 KRT223P-202ENST00000449164 1292 ntBASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 FO681548.1-201ENST00000455617 1132 ntBASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 AC119751.2-201ENST00000504529 210 ntBASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 AC026434.2-201ENST00000506094 1078 ntBASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 AHRR-211ENST00000515206 462 ntTSL 5 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 AC078819.1-201ENST00000547454 765 ntBASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 AC012085.1-201ENST00000548270 765 ntBASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 RPS15-202ENST00000585665 467 ntTSL 3 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 AL008721.1-201ENST00000609964 604 ntBASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 PTENP1-202ENST00000532280 3996 ntBASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM39Q9HCM9 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms