Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 GPR132-202ENST00000392585 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 NR4A2-209ENST00000426264 2642 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 ANKRD20A19P-202ENST00000442969 2796 ntTSL 2 BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 SAMD15-201ENST00000216471 2564 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 AC131902.2-201ENST00000566892 2172 ntBASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 CD82-202ENST00000342935 967 ntTSL 5 BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 PMP22-202ENST00000395936 816 ntTSL 3 BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 ALG1L5P-201ENST00000482043 771 ntBASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 AC120114.3-201ENST00000611923 658 ntBASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 SFMBT2-203ENST00000379713 2402 ntTSL 2 BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28BQ9BUN5 C7orf57-202ENST00000420324 1957 ntTSL 5 BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 CEND1P1-201ENST00000451006 455 ntBASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC14.65□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms