Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 MAP2K4-202ENST00000415385 3856 ntAPPRIS ALT2 TSL 2 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 SLC25A24-203ENST00000565488 4271 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 SESN2-201ENST00000253063 3453 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 TRAPPC10-201ENST00000291574 6976 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 AC005077.2-201ENST00000449786 690 ntBASIC4.7□□□□□ -1.66
SYNE1Q8NF91 AC104073.2-201ENST00000453737 312 ntBASIC4.7□□□□□ -1.66
SYNE1Q8NF91 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 TSACC-208ENST00000481479 741 ntTSL 2 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 PARP8-206ENST00000503665 572 ntTSL 4 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 ACTG1P17-201ENST00000558391 1119 ntBASIC4.7□□□□□ -1.66
SYNE1Q8NF91 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 AL121723.1-201ENST00000445194 1519 ntBASIC4.7□□□□□ -1.66
SYNE1Q8NF91 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 SLC5A8-201ENST00000536262 4178 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 LARP4-220ENST00000615080 856 ntTSL 5 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 BDH1-202ENST00000392378 3455 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 SLC6A1-201ENST00000287766 4502 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 DHX37-201ENST00000308736 4550 ntAPPRIS P2 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 USP40-206ENST00000443711 628 ntTSL 2 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 Z93015.1-201ENST00000451718 390 ntBASIC4.69□□□□□ -1.66
SYNE1Q8NF91 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 AC079328.1-201ENST00000560358 952 ntBASIC4.69□□□□□ -1.66
SYNE1Q8NF91 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 PAM16-215ENST00000577031 548 ntTSL 4 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 INTS5-201ENST00000330574 3285 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms