Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 PNMT-202ENST00000394246 821 ntTSL 2 BASIC17.13■□□□□ 0.33
ATL3Q6DD88 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC17.13■□□□□ 0.33
ATL3Q6DD88 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC17.13■□□□□ 0.33
ATL3Q6DD88 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC17.13■□□□□ 0.33
ATL3Q6DD88 ENPP7P5-201ENST00000541031 1031 ntBASIC17.13■□□□□ 0.33
ATL3Q6DD88 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
ATL3Q6DD88 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC17.13■□□□□ 0.33
ATL3Q6DD88 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
ATL3Q6DD88 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
ATL3Q6DD88 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ATL3Q6DD88 ADK-205ENST00000539909 1866 ntTSL 2 BASIC17.13■□□□□ 0.33
ATL3Q6DD88 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ATL3Q6DD88 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ATL3Q6DD88 MRPL37P1-201ENST00000592451 1337 ntBASIC17.13■□□□□ 0.33
ATL3Q6DD88 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC17.13■□□□□ 0.33
ATL3Q6DD88 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC17.13■□□□□ 0.33
ATL3Q6DD88 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
ATL3Q6DD88 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ATL3Q6DD88 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ATL3Q6DD88 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
ATL3Q6DD88 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
ATL3Q6DD88 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ATL3Q6DD88 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
ATL3Q6DD88 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ATL3Q6DD88 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
ATL3Q6DD88 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC17.13■□□□□ 0.33
ATL3Q6DD88 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ATL3Q6DD88 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC17.12■□□□□ 0.33
ATL3Q6DD88 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC17.12■□□□□ 0.33
ATL3Q6DD88 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC17.12■□□□□ 0.33
ATL3Q6DD88 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATL3Q6DD88 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATL3Q6DD88 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATL3Q6DD88 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATL3Q6DD88 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC17.12■□□□□ 0.33
ATL3Q6DD88 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ATL3Q6DD88 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATL3Q6DD88 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ATL3Q6DD88 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATL3Q6DD88 NSL1-201ENST00000366976 722 ntTSL 2 BASIC17.12■□□□□ 0.33
ATL3Q6DD88 CALY-202ENST00000368555 783 ntTSL 2 BASIC17.12■□□□□ 0.33
ATL3Q6DD88 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ATL3Q6DD88 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATL3Q6DD88 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC17.12■□□□□ 0.33
ATL3Q6DD88 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC17.12■□□□□ 0.33
ATL3Q6DD88 AC093512.1-201ENST00000617969 520 ntBASIC17.12■□□□□ 0.33
ATL3Q6DD88 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATL3Q6DD88 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATL3Q6DD88 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC17.12■□□□□ 0.33
ATL3Q6DD88 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATL3Q6DD88 AL138725.1-201ENST00000407347 1314 ntBASIC17.12■□□□□ 0.33
ATL3Q6DD88 AC117489.1-201ENST00000625169 3217 ntBASIC17.12■□□□□ 0.33
ATL3Q6DD88 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ATL3Q6DD88 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC17.12■□□□□ 0.33
ATL3Q6DD88 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC17.12■□□□□ 0.33
ATL3Q6DD88 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC17.12■□□□□ 0.33
ATL3Q6DD88 RN7SL832P-201ENST00000607781 1756 ntBASIC17.12■□□□□ 0.33
ATL3Q6DD88 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
ATL3Q6DD88 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ATL3Q6DD88 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
ATL3Q6DD88 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ATL3Q6DD88 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
ATL3Q6DD88 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ATL3Q6DD88 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ATL3Q6DD88 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC17.11■□□□□ 0.33
ATL3Q6DD88 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ATL3Q6DD88 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ATL3Q6DD88 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ATL3Q6DD88 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
ATL3Q6DD88 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ATL3Q6DD88 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC17.11■□□□□ 0.33
ATL3Q6DD88 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ATL3Q6DD88 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
ATL3Q6DD88 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ATL3Q6DD88 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
ATL3Q6DD88 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ATL3Q6DD88 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ATL3Q6DD88 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC17.11■□□□□ 0.33
ATL3Q6DD88 PGGT1BP2-201ENST00000398621 1028 ntBASIC17.11■□□□□ 0.33
ATL3Q6DD88 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC17.11■□□□□ 0.33
ATL3Q6DD88 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC17.11■□□□□ 0.33
ATL3Q6DD88 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC17.11■□□□□ 0.33
ATL3Q6DD88 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ATL3Q6DD88 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC17.11■□□□□ 0.33
ATL3Q6DD88 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
ATL3Q6DD88 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
ATL3Q6DD88 VPS18-202ENST00000558474 873 ntTSL 3 BASIC17.11■□□□□ 0.33
ATL3Q6DD88 AL359711.2-201ENST00000563105 872 ntBASIC17.11■□□□□ 0.33
ATL3Q6DD88 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
ATL3Q6DD88 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ATL3Q6DD88 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC17.11■□□□□ 0.33
ATL3Q6DD88 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
ATL3Q6DD88 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC17.11■□□□□ 0.33
ATL3Q6DD88 TMEM261P1-201ENST00000604899 340 ntBASIC17.11■□□□□ 0.33
ATL3Q6DD88 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
ATL3Q6DD88 AC008761.3-201ENST00000624803 892 ntBASIC17.11■□□□□ 0.33
ATL3Q6DD88 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ATL3Q6DD88 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
ATL3Q6DD88 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
ATL3Q6DD88 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms