Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RN7SL837P-201ENST00000463010 287 ntBASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 AC099548.2-209ENST00000480264 625 ntBASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 FOS-206ENST00000555347 1280 ntTSL 2 BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 AP000842.3-202ENST00000569238 1080 ntBASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 AC008494.3-201ENST00000606615 944 ntBASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 RNA5-8SN1-201ENST00000610460 153 ntBASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 RNA5-8SN5-202ENST00000612463 153 ntBASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 RNA5-8SN4-201ENST00000613359 153 ntBASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 RNA5-8SN5-201ENST00000619471 153 ntBASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 AL139099.5-201ENST00000635274 300 ntBASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 UCKL1-AS1-201ENST00000623569 3602 ntBASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 AJ011931.1-201ENST00000618749 2492 ntBASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC12.58□□□□□ -0.39
PDLIM3Q53GG5 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
PDLIM3Q53GG5 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
PDLIM3Q53GG5 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
PDLIM3Q53GG5 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC12.58□□□□□ -0.39
PDLIM3Q53GG5 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
PDLIM3Q53GG5 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC12.58□□□□□ -0.39
PDLIM3Q53GG5 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 APOC3-202ENST00000375345 604 ntTSL 5 BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 GRK6P1-201ENST00000400595 1711 ntBASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 ELP6-209ENST00000446787 894 ntTSL 3 BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 HLA-V-204ENST00000476601 1289 ntBASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 AC104989.1-201ENST00000519711 778 ntBASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 SNX29P1-201ENST00000548357 1007 ntBASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 SUOX-214ENST00000551841 906 ntTSL 3 BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 WASH4P-201ENST00000564273 1246 ntBASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 ORC6-206ENST00000568364 888 ntTSL 5 BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 FP325330.2-201ENST00000624219 5630 ntBASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 RAB34-223ENST00000636154 730 ntTSL 2 BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 HECTD1-219ENST00000611816 8980 ntTSL 5 BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC12.58□□□□□ -0.4
PDLIM3Q53GG5 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms