Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCNA1P78396 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
CCNA1P78396 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC16.94■□□□□ 0.3
CCNA1P78396 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCNA1P78396 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCNA1P78396 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCNA1P78396 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCNA1P78396 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCNA1P78396 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCNA1P78396 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
CCNA1P78396 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCNA1P78396 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC16.93■□□□□ 0.3
CCNA1P78396 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCNA1P78396 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCNA1P78396 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCNA1P78396 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCNA1P78396 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC16.93■□□□□ 0.3
CCNA1P78396 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC16.93■□□□□ 0.3
CCNA1P78396 AC087481.3-201ENST00000602886 1894 ntBASIC16.93■□□□□ 0.3
CCNA1P78396 AC023090.2-201ENST00000625182 2110 ntBASIC16.93■□□□□ 0.3
CCNA1P78396 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCNA1P78396 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
CCNA1P78396 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCNA1P78396 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
CCNA1P78396 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCNA1P78396 RPSAP31-201ENST00000416648 895 ntBASIC16.93■□□□□ 0.3
CCNA1P78396 HPGD-203ENST00000422112 805 ntTSL 2 BASIC16.93■□□□□ 0.3
CCNA1P78396 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCNA1P78396 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCNA1P78396 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCNA1P78396 AC078991.1-201ENST00000437297 610 ntBASIC16.93■□□□□ 0.3
CCNA1P78396 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC16.93■□□□□ 0.3
CCNA1P78396 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC16.93■□□□□ 0.3
CCNA1P78396 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC16.93■□□□□ 0.3
CCNA1P78396 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
CCNA1P78396 AL109837.1-201ENST00000603272 613 ntBASIC16.93■□□□□ 0.3
CCNA1P78396 AC092171.5-201ENST00000608012 942 ntBASIC16.93■□□□□ 0.3
CCNA1P78396 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCNA1P78396 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCNA1P78396 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC16.93■□□□□ 0.3
CCNA1P78396 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCNA1P78396 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCNA1P78396 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCNA1P78396 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCNA1P78396 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCNA1P78396 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCNA1P78396 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC16.93■□□□□ 0.3
CCNA1P78396 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC16.93■□□□□ 0.3
CCNA1P78396 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCNA1P78396 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
CCNA1P78396 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCNA1P78396 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC16.92■□□□□ 0.3
CCNA1P78396 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.92■□□□□ 0.3
CCNA1P78396 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.92■□□□□ 0.3
CCNA1P78396 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCNA1P78396 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCNA1P78396 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCNA1P78396 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCNA1P78396 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCNA1P78396 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCNA1P78396 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCNA1P78396 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCNA1P78396 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCNA1P78396 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCNA1P78396 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC16.92■□□□□ 0.3
CCNA1P78396 OR2K2-202ENST00000374428 1038 ntBASIC16.92■□□□□ 0.3
CCNA1P78396 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCNA1P78396 LBH-202ENST00000401506 485 ntTSL 3 BASIC16.92■□□□□ 0.3
CCNA1P78396 RPL8P2-201ENST00000430538 502 ntBASIC16.92■□□□□ 0.3
CCNA1P78396 RPL7P35-201ENST00000446943 740 ntBASIC16.92■□□□□ 0.3
CCNA1P78396 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC16.92■□□□□ 0.3
CCNA1P78396 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC16.92■□□□□ 0.3
CCNA1P78396 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
CCNA1P78396 AP000845.1-201ENST00000581677 2131 ntBASIC16.92■□□□□ 0.3
CCNA1P78396 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC16.92■□□□□ 0.3
CCNA1P78396 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.92■□□□□ 0.3
CCNA1P78396 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCNA1P78396 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCNA1P78396 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCNA1P78396 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCNA1P78396 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCNA1P78396 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCNA1P78396 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCNA1P78396 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
CCNA1P78396 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCNA1P78396 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC16.92■□□□□ 0.3
CCNA1P78396 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.92■□□□□ 0.3
CCNA1P78396 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
CCNA1P78396 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCNA1P78396 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCNA1P78396 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CCNA1P78396 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC16.91■□□□□ 0.3
CCNA1P78396 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CCNA1P78396 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC16.91■□□□□ 0.3
CCNA1P78396 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCNA1P78396 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC16.91■□□□□ 0.3
CCNA1P78396 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCNA1P78396 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC16.91■□□□□ 0.3
CCNA1P78396 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCNA1P78396 RPS9P1-201ENST00000419943 583 ntBASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 160.2 ms