Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CDH4P55283 AC015818.8-201ENST00000587907 1519 ntBASIC15.32■□□□□ 0.04
CDH4P55283 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC15.32■□□□□ 0.04
CDH4P55283 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC15.32■□□□□ 0.04
CDH4P55283 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDH4P55283 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDH4P55283 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDH4P55283 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH4P55283 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDH4P55283 PCDHA3-202ENST00000532566 4594 ntBASIC15.31■□□□□ 0.04
CDH4P55283 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH4P55283 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH4P55283 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC15.31■□□□□ 0.04
CDH4P55283 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDH4P55283 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH4P55283 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH4P55283 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
CDH4P55283 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH4P55283 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH4P55283 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH4P55283 HIST2H2BB-201ENST00000449108 381 ntBASIC15.31■□□□□ 0.04
CDH4P55283 GCOM2-201ENST00000509133 1104 ntBASIC15.31■□□□□ 0.04
CDH4P55283 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC15.31■□□□□ 0.04
CDH4P55283 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC15.31■□□□□ 0.04
CDH4P55283 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC15.31■□□□□ 0.04
CDH4P55283 BX088702.1-201ENST00000610784 235 ntBASIC15.31■□□□□ 0.04
CDH4P55283 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDH4P55283 CICP23-201ENST00000605013 2741 ntBASIC15.31■□□□□ 0.04
CDH4P55283 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CDH4P55283 REXO1L6P-201ENST00000603433 1515 ntBASIC15.31■□□□□ 0.04
CDH4P55283 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDH4P55283 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC15.31■□□□□ 0.04
CDH4P55283 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDH4P55283 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH4P55283 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH4P55283 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDH4P55283 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH4P55283 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH4P55283 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDH4P55283 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC15.31■□□□□ 0.04
CDH4P55283 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH4P55283 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDH4P55283 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDH4P55283 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH4P55283 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC15.31■□□□□ 0.04
CDH4P55283 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH4P55283 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CDH4P55283 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC15.3■□□□□ 0.04
CDH4P55283 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC15.3■□□□□ 0.04
CDH4P55283 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
CDH4P55283 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH4P55283 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH4P55283 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH4P55283 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH4P55283 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH4P55283 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH4P55283 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CDH4P55283 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CDH4P55283 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH4P55283 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH4P55283 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CDH4P55283 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH4P55283 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC15.3■□□□□ 0.04
CDH4P55283 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH4P55283 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CDH4P55283 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CDH4P55283 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC15.3■□□□□ 0.04
CDH4P55283 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC15.3■□□□□ 0.04
CDH4P55283 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC15.3■□□□□ 0.04
CDH4P55283 FAM86HP-204ENST00000513466 959 ntBASIC15.3■□□□□ 0.04
CDH4P55283 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CDH4P55283 RIT1-205ENST00000539040 919 ntTSL 2 BASIC15.3■□□□□ 0.04
CDH4P55283 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC15.3■□□□□ 0.04
CDH4P55283 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC15.3■□□□□ 0.04
CDH4P55283 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC15.3■□□□□ 0.04
CDH4P55283 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CDH4P55283 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC15.3■□□□□ 0.04
CDH4P55283 AL358472.3-201ENST00000608147 415 ntBASIC15.3■□□□□ 0.04
CDH4P55283 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CDH4P55283 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC15.3■□□□□ 0.04
CDH4P55283 MYB-201ENST00000316528 3571 ntTSL 5 BASIC15.3■□□□□ 0.04
CDH4P55283 MYB-241ENST00000616088 3573 ntTSL 5 BASIC15.3■□□□□ 0.04
CDH4P55283 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH4P55283 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH4P55283 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC15.3■□□□□ 0.04
CDH4P55283 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH4P55283 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15.3■□□□□ 0.04
CDH4P55283 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH4P55283 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CDH4P55283 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH4P55283 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC15.29■□□□□ 0.04
CDH4P55283 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH4P55283 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC15.29■□□□□ 0.04
CDH4P55283 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC15.29■□□□□ 0.04
CDH4P55283 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH4P55283 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH4P55283 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH4P55283 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC15.29■□□□□ 0.04
CDH4P55283 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH4P55283 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms