Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 API5-208ENST00000531273 1868 ntTSL 2 BASIC20.37■□□□□ 0.85
MSH6P52701 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
MSH6P52701 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSH6P52701 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSH6P52701 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSH6P52701 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSH6P52701 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSH6P52701 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MSH6P52701 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC20.36■□□□□ 0.85
MSH6P52701 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
MSH6P52701 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MSH6P52701 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MSH6P52701 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC20.36■□□□□ 0.85
MSH6P52701 AC073869.2-201ENST00000417338 1026 ntBASIC20.36■□□□□ 0.85
MSH6P52701 ACTG1P19-201ENST00000418987 1116 ntBASIC20.36■□□□□ 0.85
MSH6P52701 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC20.36■□□□□ 0.85
MSH6P52701 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC20.36■□□□□ 0.85
MSH6P52701 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC20.36■□□□□ 0.85
MSH6P52701 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC20.36■□□□□ 0.85
MSH6P52701 AC083801.1-201ENST00000491689 358 ntBASIC20.36■□□□□ 0.85
MSH6P52701 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC20.36■□□□□ 0.85
MSH6P52701 AC106047.2-201ENST00000511723 743 ntBASIC20.36■□□□□ 0.85
MSH6P52701 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC20.36■□□□□ 0.85
MSH6P52701 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC20.36■□□□□ 0.85
MSH6P52701 KRT8P1-201ENST00000557533 1207 ntBASIC20.36■□□□□ 0.85
MSH6P52701 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC20.36■□□□□ 0.85
MSH6P52701 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC20.36■□□□□ 0.85
MSH6P52701 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
MSH6P52701 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC20.36■□□□□ 0.85
MSH6P52701 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC20.36■□□□□ 0.85
MSH6P52701 AC010976.2-201ENST00000609697 852 ntBASIC20.36■□□□□ 0.85
MSH6P52701 AC006483.2-201ENST00000609813 515 ntBASIC20.36■□□□□ 0.85
MSH6P52701 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC20.36■□□□□ 0.85
MSH6P52701 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
MSH6P52701 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MSH6P52701 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MSH6P52701 ENPP7P8-202ENST00000527856 1345 ntBASIC20.36■□□□□ 0.85
MSH6P52701 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC20.36■□□□□ 0.85
MSH6P52701 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MSH6P52701 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
MSH6P52701 AC010491.1-201ENST00000563101 2797 ntBASIC20.36■□□□□ 0.85
MSH6P52701 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MSH6P52701 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MSH6P52701 AC025183.3-201ENST00000623526 1482 ntBASIC20.36■□□□□ 0.85
MSH6P52701 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MSH6P52701 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC20.36■□□□□ 0.85
MSH6P52701 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
MSH6P52701 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
MSH6P52701 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC20.36■□□□□ 0.85
MSH6P52701 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC20.35■□□□□ 0.85
MSH6P52701 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
MSH6P52701 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
MSH6P52701 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSH6P52701 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC20.35■□□□□ 0.85
MSH6P52701 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC20.35■□□□□ 0.85
MSH6P52701 SRP14-204ENST00000558720 780 ntTSL 2 BASIC20.35■□□□□ 0.85
MSH6P52701 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSH6P52701 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC20.35■□□□□ 0.85
MSH6P52701 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSH6P52701 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC20.35■□□□□ 0.85
MSH6P52701 CICP11-201ENST00000434745 2827 ntBASIC20.35■□□□□ 0.85
MSH6P52701 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSH6P52701 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSH6P52701 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSH6P52701 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC20.35■□□□□ 0.85
MSH6P52701 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC20.35■□□□□ 0.85
MSH6P52701 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSH6P52701 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC20.35■□□□□ 0.85
MSH6P52701 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC20.35■□□□□ 0.85
MSH6P52701 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC20.35■□□□□ 0.85
MSH6P52701 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
MSH6P52701 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
MSH6P52701 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSH6P52701 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
MSH6P52701 AC092127.1-201ENST00000567093 3455 ntBASIC20.35■□□□□ 0.85
MSH6P52701 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSH6P52701 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
MSH6P52701 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
MSH6P52701 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSH6P52701 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC20.34■□□□□ 0.85
MSH6P52701 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSH6P52701 OR51A9P-201ENST00000422578 911 ntBASIC20.34■□□□□ 0.85
MSH6P52701 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
MSH6P52701 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC20.34■□□□□ 0.85
MSH6P52701 AC063952.3-201ENST00000467756 308 ntBASIC20.34■□□□□ 0.85
MSH6P52701 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
MSH6P52701 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
MSH6P52701 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSH6P52701 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSH6P52701 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC20.34■□□□□ 0.85
MSH6P52701 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSH6P52701 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
MSH6P52701 AC007292.2-201ENST00000593524 1812 ntBASIC20.34■□□□□ 0.85
MSH6P52701 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC20.34■□□□□ 0.85
MSH6P52701 API5-202ENST00000420461 2009 ntTSL 2 BASIC20.34■□□□□ 0.85
MSH6P52701 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSH6P52701 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSH6P52701 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC20.34■□□□□ 0.85
MSH6P52701 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
MSH6P52701 AL359258.3-201ENST00000622910 2331 ntBASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms