Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 ORAOV1P1-201ENST00000503108 395 ntBASIC14.76□□□□□ -0.05
CXCL12P48061 MRPL22P1-201ENST00000505398 616 ntBASIC14.76□□□□□ -0.05
CXCL12P48061 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC14.76□□□□□ -0.05
CXCL12P48061 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC14.76□□□□□ -0.05
CXCL12P48061 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC14.76□□□□□ -0.05
CXCL12P48061 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC14.76□□□□□ -0.05
CXCL12P48061 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
CXCL12P48061 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC14.76□□□□□ -0.05
CXCL12P48061 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC14.76□□□□□ -0.05
CXCL12P48061 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC14.76□□□□□ -0.05
CXCL12P48061 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
CXCL12P48061 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CXCL12P48061 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
CXCL12P48061 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
CXCL12P48061 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
CXCL12P48061 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
CXCL12P48061 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC14.76□□□□□ -0.05
CXCL12P48061 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CXCL12P48061 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CXCL12P48061 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CXCL12P48061 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC14.76□□□□□ -0.05
CXCL12P48061 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC14.76□□□□□ -0.05
CXCL12P48061 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC14.75□□□□□ -0.05
CXCL12P48061 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CXCL12P48061 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
CXCL12P48061 FAS-202ENST00000352159 1722 ntTSL 5 BASIC14.75□□□□□ -0.05
CXCL12P48061 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CXCL12P48061 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CXCL12P48061 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CXCL12P48061 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
CXCL12P48061 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
CXCL12P48061 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC14.75□□□□□ -0.05
CXCL12P48061 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CXCL12P48061 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
CXCL12P48061 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC14.75□□□□□ -0.05
CXCL12P48061 PTPA-215ENST00000432124 567 ntTSL 4 BASIC14.75□□□□□ -0.05
CXCL12P48061 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
CXCL12P48061 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC14.75□□□□□ -0.05
CXCL12P48061 DUX4L50-201ENST00000455245 715 ntBASIC14.75□□□□□ -0.05
CXCL12P48061 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CXCL12P48061 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC14.75□□□□□ -0.05
CXCL12P48061 ALG1L13P-202ENST00000519320 584 ntBASIC14.75□□□□□ -0.05
CXCL12P48061 TMCO5B-205ENST00000530020 894 ntBASIC14.75□□□□□ -0.05
CXCL12P48061 AC131206.1-201ENST00000538078 1211 ntBASIC14.75□□□□□ -0.05
CXCL12P48061 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC14.75□□□□□ -0.05
CXCL12P48061 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC14.75□□□□□ -0.05
CXCL12P48061 AC084781.1-201ENST00000613737 656 ntBASIC14.75□□□□□ -0.05
CXCL12P48061 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
CXCL12P48061 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC14.75□□□□□ -0.05
CXCL12P48061 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
CXCL12P48061 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC14.75□□□□□ -0.05
CXCL12P48061 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
CXCL12P48061 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC14.75□□□□□ -0.05
CXCL12P48061 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC14.75□□□□□ -0.05
CXCL12P48061 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
CXCL12P48061 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CXCL12P48061 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC14.75□□□□□ -0.05
CXCL12P48061 MARK2P16-201ENST00000605714 1723 ntBASIC14.75□□□□□ -0.05
CXCL12P48061 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
CXCL12P48061 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC14.75□□□□□ -0.05
CXCL12P48061 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CXCL12P48061 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
CXCL12P48061 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC14.74□□□□□ -0.05
CXCL12P48061 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CXCL12P48061 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CXCL12P48061 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CXCL12P48061 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC14.74□□□□□ -0.05
CXCL12P48061 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC14.74□□□□□ -0.05
CXCL12P48061 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
CXCL12P48061 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
CXCL12P48061 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC14.74□□□□□ -0.05
CXCL12P48061 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
CXCL12P48061 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CXCL12P48061 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
CXCL12P48061 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
CXCL12P48061 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC14.74□□□□□ -0.05
CXCL12P48061 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
CXCL12P48061 HLA-DMA-203ENST00000395305 777 ntBASIC14.74□□□□□ -0.05
CXCL12P48061 KRT18P36-201ENST00000411618 1276 ntBASIC14.74□□□□□ -0.05
CXCL12P48061 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
CXCL12P48061 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC14.74□□□□□ -0.05
CXCL12P48061 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
CXCL12P48061 RN7SL530P-201ENST00000485097 298 ntBASIC14.74□□□□□ -0.05
CXCL12P48061 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
CXCL12P48061 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
CXCL12P48061 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CXCL12P48061 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
CXCL12P48061 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
CXCL12P48061 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC14.74□□□□□ -0.05
CXCL12P48061 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC14.74□□□□□ -0.05
CXCL12P48061 RNF146-211ENST00000609447 607 ntTSL 4 BASIC14.74□□□□□ -0.05
CXCL12P48061 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC14.74□□□□□ -0.05
CXCL12P48061 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
CXCL12P48061 MVK-217ENST00000639206 367 ntTSL 5 BASIC14.74□□□□□ -0.05
CXCL12P48061 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
CXCL12P48061 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC14.74□□□□□ -0.05
CXCL12P48061 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CXCL12P48061 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
CXCL12P48061 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CXCL12P48061 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms