Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL4A3BPQ9Y5P4 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL4A3BPQ9Y5P4 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
COL4A3BPQ9Y5P4 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL4A3BPQ9Y5P4 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC16.83■□□□□ 0.28
COL4A3BPQ9Y5P4 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC16.83■□□□□ 0.28
COL4A3BPQ9Y5P4 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC16.83■□□□□ 0.28
COL4A3BPQ9Y5P4 RNA5SP486-201ENST00000515961 83 ntBASIC16.83■□□□□ 0.28
COL4A3BPQ9Y5P4 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL4A3BPQ9Y5P4 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL4A3BPQ9Y5P4 AL583810.1-201ENST00000553344 1045 ntBASIC16.83■□□□□ 0.28
COL4A3BPQ9Y5P4 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC16.83■□□□□ 0.28
COL4A3BPQ9Y5P4 DUX4L47-201ENST00000566374 394 ntBASIC16.83■□□□□ 0.28
COL4A3BPQ9Y5P4 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL4A3BPQ9Y5P4 RN7SL48P-201ENST00000579283 293 ntBASIC16.83■□□□□ 0.28
COL4A3BPQ9Y5P4 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC16.83■□□□□ 0.28
COL4A3BPQ9Y5P4 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL4A3BPQ9Y5P4 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL4A3BPQ9Y5P4 ETV2-208ENST00000621247 941 ntTSL 5 BASIC16.83■□□□□ 0.28
COL4A3BPQ9Y5P4 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC16.83■□□□□ 0.28
COL4A3BPQ9Y5P4 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
COL4A3BPQ9Y5P4 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC16.83■□□□□ 0.28
COL4A3BPQ9Y5P4 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
COL4A3BPQ9Y5P4 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
COL4A3BPQ9Y5P4 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL4A3BPQ9Y5P4 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 CICP14-201ENST00000629111 2732 ntBASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 FAM21FP-201ENST00000426241 1131 ntBASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 EIF3FP3-201ENST00000434851 1086 ntBASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 RNA5SP412-201ENST00000516234 123 ntBASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 AC008687.7-202ENST00000637404 953 ntBASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 COCH-203ENST00000460581 2688 ntTSL 2 BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
COL4A3BPQ9Y5P4 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
COL4A3BPQ9Y5P4 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A3BPQ9Y5P4 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A3BPQ9Y5P4 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
COL4A3BPQ9Y5P4 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A3BPQ9Y5P4 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A3BPQ9Y5P4 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC16.81■□□□□ 0.28
COL4A3BPQ9Y5P4 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC16.81■□□□□ 0.28
COL4A3BPQ9Y5P4 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A3BPQ9Y5P4 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC16.81■□□□□ 0.28
COL4A3BPQ9Y5P4 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A3BPQ9Y5P4 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A3BPQ9Y5P4 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A3BPQ9Y5P4 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A3BPQ9Y5P4 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A3BPQ9Y5P4 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A3BPQ9Y5P4 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A3BPQ9Y5P4 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A3BPQ9Y5P4 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC16.81■□□□□ 0.28
COL4A3BPQ9Y5P4 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC16.81■□□□□ 0.28
COL4A3BPQ9Y5P4 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A3BPQ9Y5P4 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC16.81■□□□□ 0.28
COL4A3BPQ9Y5P4 YBX1P6-201ENST00000442962 1002 ntBASIC16.81■□□□□ 0.28
COL4A3BPQ9Y5P4 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC16.81■□□□□ 0.28
COL4A3BPQ9Y5P4 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC16.81■□□□□ 0.28
COL4A3BPQ9Y5P4 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC16.81■□□□□ 0.28
COL4A3BPQ9Y5P4 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 695.6 ms