Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 RNA5-8SN5-201ENST00000619471 153 ntBASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 AC136759.1-202ENST00000530858 2194 ntBASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 CYMP-203ENST00000474680 1263 ntBASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 DOC2GP-202ENST00000514950 1163 ntBASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 REEP4-207ENST00000523293 913 ntTSL 3 BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 AC004790.1-201ENST00000612686 536 ntBASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 CTBP1-AS2-206ENST00000581398 5652 ntBASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
RHBDD3Q9Y3P4 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 CICP4-201ENST00000447359 2812 ntBASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 AC006504.5-208ENST00000588784 2401 ntBASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC13.22□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms