Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 AL136317.3-201ENST00000618497 906 ntBASIC14.84□□□□□ -0.03
MKS1Q9NXB0 CICP16-201ENST00000502609 2813 ntBASIC14.84□□□□□ -0.03
MKS1Q9NXB0 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC14.84□□□□□ -0.03
MKS1Q9NXB0 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC14.84□□□□□ -0.03
MKS1Q9NXB0 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
MKS1Q9NXB0 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
MKS1Q9NXB0 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
MKS1Q9NXB0 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
MKS1Q9NXB0 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
MKS1Q9NXB0 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
MKS1Q9NXB0 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
MKS1Q9NXB0 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
MKS1Q9NXB0 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
MKS1Q9NXB0 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
MKS1Q9NXB0 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
MKS1Q9NXB0 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
MKS1Q9NXB0 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
MKS1Q9NXB0 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
MKS1Q9NXB0 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
MKS1Q9NXB0 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
MKS1Q9NXB0 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
MKS1Q9NXB0 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
MKS1Q9NXB0 BTBD7P1-201ENST00000447253 1453 ntBASIC14.83□□□□□ -0.03
MKS1Q9NXB0 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.03
MKS1Q9NXB0 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC14.83□□□□□ -0.03
MKS1Q9NXB0 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
MKS1Q9NXB0 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 GSN-209ENST00000449733 2702 ntTSL 2 BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 RDX-218ENST00000544551 4117 ntTSL 2 BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 WRB-204ENST00000398753 699 ntTSL 3 BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 LSM5-207ENST00000410044 687 ntTSL 3 BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 MIR3687-2-201ENST00000577708 61 ntBASIC14.83□□□□□ -0.04
MKS1Q9NXB0 AC015911.4-201ENST00000588022 1070 ntBASIC14.83□□□□□ -0.04
MKS1Q9NXB0 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 AC027612.4-201ENST00000605371 583 ntBASIC14.83□□□□□ -0.04
MKS1Q9NXB0 MIR3687-1-201ENST00000614492 61 ntBASIC14.83□□□□□ -0.04
MKS1Q9NXB0 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
MKS1Q9NXB0 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MKS1Q9NXB0 AC003102.2-201ENST00000589195 1469 ntBASIC14.82□□□□□ -0.04
MKS1Q9NXB0 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
MKS1Q9NXB0 MAPT-IT1-201ENST00000624111 3016 ntBASIC14.82□□□□□ -0.04
MKS1Q9NXB0 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
MKS1Q9NXB0 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC14.82□□□□□ -0.04
MKS1Q9NXB0 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
MKS1Q9NXB0 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC14.82□□□□□ -0.04
MKS1Q9NXB0 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC14.82□□□□□ -0.04
MKS1Q9NXB0 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MKS1Q9NXB0 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
MKS1Q9NXB0 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MKS1Q9NXB0 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
MKS1Q9NXB0 LSS-211ENST00000522411 2523 ntTSL 2 BASIC14.82□□□□□ -0.04
MKS1Q9NXB0 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MKS1Q9NXB0 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MKS1Q9NXB0 RPSAP43-201ENST00000402237 625 ntBASIC14.82□□□□□ -0.04
MKS1Q9NXB0 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MKS1Q9NXB0 AC004945.1-201ENST00000416738 983 ntBASIC14.82□□□□□ -0.04
MKS1Q9NXB0 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.82□□□□□ -0.04
MKS1Q9NXB0 COX10-202ENST00000429152 875 ntTSL 2 BASIC14.82□□□□□ -0.04
MKS1Q9NXB0 AC112482.1-201ENST00000492080 688 ntBASIC14.82□□□□□ -0.04
MKS1Q9NXB0 AC069120.2-201ENST00000524091 540 ntBASIC14.82□□□□□ -0.04
MKS1Q9NXB0 VPS29-207ENST00000549970 818 ntTSL 3 BASIC14.82□□□□□ -0.04
MKS1Q9NXB0 MPI-209ENST00000564003 1195 ntTSL 2 BASIC14.82□□□□□ -0.04
MKS1Q9NXB0 AL049840.4-201ENST00000602422 811 ntBASIC14.82□□□□□ -0.04
MKS1Q9NXB0 AC093813.1-201ENST00000605066 256 ntBASIC14.82□□□□□ -0.04
MKS1Q9NXB0 AL662799.1-202ENST00000614205 422 ntBASIC14.82□□□□□ -0.04
MKS1Q9NXB0 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC14.82□□□□□ -0.04
MKS1Q9NXB0 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
MKS1Q9NXB0 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms