Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
MMP28Q9H239 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
MMP28Q9H239 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC13.39□□□□□ -0.27
MMP28Q9H239 AC073439.1-201ENST00000624121 1774 ntBASIC13.39□□□□□ -0.27
MMP28Q9H239 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
MMP28Q9H239 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC13.39□□□□□ -0.27
MMP28Q9H239 SDR16C5-202ENST00000396721 2399 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
MMP28Q9H239 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
MMP28Q9H239 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC13.39□□□□□ -0.27
MMP28Q9H239 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC13.39□□□□□ -0.27
MMP28Q9H239 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
MMP28Q9H239 FAM219A-207ENST00000379089 3624 ntAPPRIS ALT1 TSL 3 BASIC13.39□□□□□ -0.27
MMP28Q9H239 TOMM40L-209ENST00000545897 2807 ntTSL 2 BASIC13.39□□□□□ -0.27
MMP28Q9H239 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC13.39□□□□□ -0.27
MMP28Q9H239 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
MMP28Q9H239 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
MMP28Q9H239 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
MMP28Q9H239 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
MMP28Q9H239 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
MMP28Q9H239 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC13.38□□□□□ -0.27
MMP28Q9H239 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
MMP28Q9H239 VPS9D1-202ENST00000561976 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
MMP28Q9H239 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
MMP28Q9H239 GUSBP11-206ENST00000455485 3816 ntTSL 2 BASIC13.38□□□□□ -0.27
MMP28Q9H239 KIAA1614-201ENST00000367587 3309 ntTSL 2 BASIC13.38□□□□□ -0.27
MMP28Q9H239 APBB2-211ENST00000506352 3316 ntAPPRIS ALT1 TSL 5 BASIC13.38□□□□□ -0.27
MMP28Q9H239 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
MMP28Q9H239 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
MMP28Q9H239 FURIN-206ENST00000610579 4191 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
MMP28Q9H239 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC13.38□□□□□ -0.27
MMP28Q9H239 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
MMP28Q9H239 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
MMP28Q9H239 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
MMP28Q9H239 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
MMP28Q9H239 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
MMP28Q9H239 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC13.38□□□□□ -0.27
MMP28Q9H239 AC138969.2-201ENST00000532739 9932 ntBASIC13.38□□□□□ -0.27
MMP28Q9H239 MICB-202ENST00000399150 2346 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
MMP28Q9H239 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
MMP28Q9H239 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
MMP28Q9H239 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
MMP28Q9H239 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
MMP28Q9H239 FUK-202ENST00000378912 3925 ntTSL 2 BASIC13.38□□□□□ -0.27
MMP28Q9H239 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
MMP28Q9H239 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
MMP28Q9H239 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
MMP28Q9H239 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
MMP28Q9H239 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
MMP28Q9H239 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
MMP28Q9H239 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC13.38□□□□□ -0.27
MMP28Q9H239 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC13.38□□□□□ -0.27
MMP28Q9H239 CNN2P11-201ENST00000429351 262 ntBASIC13.38□□□□□ -0.27
MMP28Q9H239 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC13.38□□□□□ -0.27
MMP28Q9H239 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
MMP28Q9H239 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC13.38□□□□□ -0.27
MMP28Q9H239 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC13.38□□□□□ -0.27
MMP28Q9H239 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC13.38□□□□□ -0.27
MMP28Q9H239 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
MMP28Q9H239 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
MMP28Q9H239 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC13.38□□□□□ -0.27
MMP28Q9H239 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC13.38□□□□□ -0.27
MMP28Q9H239 MMP14-201ENST00000311852 3732 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
MMP28Q9H239 AC098936.1-201ENST00000442318 2885 ntTSL 2 BASIC13.38□□□□□ -0.27
MMP28Q9H239 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
MMP28Q9H239 MCF2L-204ENST00000375608 3648 ntTSL 5 BASIC13.38□□□□□ -0.27
MMP28Q9H239 CPT1C-202ENST00000323446 2783 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
MMP28Q9H239 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
MMP28Q9H239 TMPRSS12-202ENST00000551456 3336 ntTSL 2 BASIC13.38□□□□□ -0.27
MMP28Q9H239 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
MMP28Q9H239 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
MMP28Q9H239 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
MMP28Q9H239 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
MMP28Q9H239 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
MMP28Q9H239 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
MMP28Q9H239 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
MMP28Q9H239 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC13.38□□□□□ -0.27
MMP28Q9H239 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
MMP28Q9H239 AC018442.1-201ENST00000421439 2061 ntBASIC13.38□□□□□ -0.27
MMP28Q9H239 PNPLA5-205ENST00000597664 2537 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
MMP28Q9H239 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC13.38□□□□□ -0.27
MMP28Q9H239 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
MMP28Q9H239 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
MMP28Q9H239 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
MMP28Q9H239 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC13.37□□□□□ -0.27
MMP28Q9H239 NARF-206ENST00000457415 1668 ntTSL 5 BASIC13.37□□□□□ -0.27
MMP28Q9H239 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
MMP28Q9H239 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC13.37□□□□□ -0.27
MMP28Q9H239 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC13.37□□□□□ -0.27
MMP28Q9H239 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC13.37□□□□□ -0.27
MMP28Q9H239 SLC1A1-201ENST00000262352 3722 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
MMP28Q9H239 PLCD4-202ENST00000417849 2738 ntAPPRIS P2 TSL 5 BASIC13.37□□□□□ -0.27
MMP28Q9H239 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC13.37□□□□□ -0.27
MMP28Q9H239 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
MMP28Q9H239 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
MMP28Q9H239 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
MMP28Q9H239 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
MMP28Q9H239 ARHGEF33-202ENST00000409978 4484 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
MMP28Q9H239 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
MMP28Q9H239 AC020658.7-201ENST00000624274 2442 ntBASIC13.37□□□□□ -0.27
MMP28Q9H239 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC13.37□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms