Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VPS33AQ96AX1 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS33AQ96AX1 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS33AQ96AX1 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VPS33AQ96AX1 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
VPS33AQ96AX1 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS33AQ96AX1 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS33AQ96AX1 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC14.53□□□□□ -0.08
VPS33AQ96AX1 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
VPS33AQ96AX1 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
VPS33AQ96AX1 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
VPS33AQ96AX1 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS33AQ96AX1 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS33AQ96AX1 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
VPS33AQ96AX1 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS33AQ96AX1 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
VPS33AQ96AX1 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS33AQ96AX1 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC14.52□□□□□ -0.08
VPS33AQ96AX1 GRAMD4P3-201ENST00000621665 1669 ntBASIC14.52□□□□□ -0.08
VPS33AQ96AX1 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS33AQ96AX1 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS33AQ96AX1 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS33AQ96AX1 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS33AQ96AX1 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
VPS33AQ96AX1 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS33AQ96AX1 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
VPS33AQ96AX1 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS33AQ96AX1 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
VPS33AQ96AX1 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS33AQ96AX1 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VPS33AQ96AX1 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VPS33AQ96AX1 CENPM-205ENST00000404067 905 ntTSL 3 BASIC14.52□□□□□ -0.09
VPS33AQ96AX1 CENPM-206ENST00000407253 818 ntTSL 2 BASIC14.52□□□□□ -0.09
VPS33AQ96AX1 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC14.52□□□□□ -0.09
VPS33AQ96AX1 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC14.52□□□□□ -0.09
VPS33AQ96AX1 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC14.52□□□□□ -0.09
VPS33AQ96AX1 RN7SL618P-201ENST00000477850 296 ntBASIC14.52□□□□□ -0.09
VPS33AQ96AX1 AL512356.2-201ENST00000546955 174 ntBASIC14.52□□□□□ -0.09
VPS33AQ96AX1 MIR3687-2-201ENST00000577708 61 ntBASIC14.52□□□□□ -0.09
VPS33AQ96AX1 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS33AQ96AX1 COQ4-205ENST00000609948 956 ntTSL 2 BASIC14.52□□□□□ -0.09
VPS33AQ96AX1 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC14.52□□□□□ -0.09
VPS33AQ96AX1 MIR3687-1-201ENST00000614492 61 ntBASIC14.52□□□□□ -0.09
VPS33AQ96AX1 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC14.52□□□□□ -0.09
VPS33AQ96AX1 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS33AQ96AX1 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VPS33AQ96AX1 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS33AQ96AX1 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS33AQ96AX1 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VPS33AQ96AX1 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC14.52□□□□□ -0.09
VPS33AQ96AX1 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC14.52□□□□□ -0.09
VPS33AQ96AX1 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS33AQ96AX1 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC14.52□□□□□ -0.09
VPS33AQ96AX1 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC14.52□□□□□ -0.09
VPS33AQ96AX1 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS33AQ96AX1 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.09
VPS33AQ96AX1 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS33AQ96AX1 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
VPS33AQ96AX1 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VPS33AQ96AX1 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 USP31-203ENST00000567975 2142 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 HLA-V-204ENST00000476601 1289 ntBASIC14.51□□□□□ -0.09
VPS33AQ96AX1 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 AC027612.4-201ENST00000605371 583 ntBASIC14.51□□□□□ -0.09
VPS33AQ96AX1 AL138828.2-201ENST00000615812 383 ntBASIC14.51□□□□□ -0.09
VPS33AQ96AX1 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
VPS33AQ96AX1 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms