Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 MRPS18AP1-201ENST00000414458 589 ntBASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 RN7SL399P-201ENST00000471648 279 ntBASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 RNA5-8SN1-201ENST00000610460 153 ntBASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 RNA5-8SN5-202ENST00000612463 153 ntBASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 RNA5-8SN4-201ENST00000613359 153 ntBASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 AC093512.1-201ENST00000617969 520 ntBASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 RNA5-8SN5-201ENST00000619471 153 ntBASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
ATG4AQ8WYN0 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 R3HDM2P2-201ENST00000401880 2116 ntBASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 TPRX2P-201ENST00000535362 881 ntBASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 AC092135.3-201ENST00000624151 1846 ntBASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ATG4AQ8WYN0 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms