Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
SOX2P48431 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC13.33□□□□□ -0.28
SOX2P48431 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
SOX2P48431 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC13.33□□□□□ -0.28
SOX2P48431 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
SOX2P48431 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
SOX2P48431 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
SOX2P48431 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SOX2P48431 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
SOX2P48431 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC13.33□□□□□ -0.28
SOX2P48431 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
SOX2P48431 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
SOX2P48431 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX2P48431 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SOX2P48431 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX2P48431 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX2P48431 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX2P48431 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC13.32□□□□□ -0.28
SOX2P48431 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX2P48431 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX2P48431 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
SOX2P48431 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX2P48431 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX2P48431 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX2P48431 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
SOX2P48431 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX2P48431 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SOX2P48431 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
SOX2P48431 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SOX2P48431 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX2P48431 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC13.32□□□□□ -0.28
SOX2P48431 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC13.32□□□□□ -0.28
SOX2P48431 RPL13P2-201ENST00000440687 659 ntBASIC13.32□□□□□ -0.28
SOX2P48431 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
SOX2P48431 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX2P48431 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC13.32□□□□□ -0.28
SOX2P48431 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC13.32□□□□□ -0.28
SOX2P48431 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC13.32□□□□□ -0.28
SOX2P48431 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC13.32□□□□□ -0.28
SOX2P48431 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC13.32□□□□□ -0.28
SOX2P48431 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX2P48431 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX2P48431 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX2P48431 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX2P48431 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX2P48431 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX2P48431 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC13.32□□□□□ -0.28
SOX2P48431 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX2P48431 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX2P48431 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX2P48431 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX2P48431 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
SOX2P48431 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX2P48431 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX2P48431 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
SOX2P48431 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SOX2P48431 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX2P48431 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC13.32□□□□□ -0.28
SOX2P48431 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX2P48431 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC13.32□□□□□ -0.28
SOX2P48431 AC092135.3-201ENST00000624151 1846 ntBASIC13.32□□□□□ -0.28
SOX2P48431 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX2P48431 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
SOX2P48431 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX2P48431 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SOX2P48431 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX2P48431 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX2P48431 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX2P48431 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC13.31□□□□□ -0.28
SOX2P48431 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC13.31□□□□□ -0.28
SOX2P48431 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX2P48431 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
SOX2P48431 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC13.31□□□□□ -0.28
SOX2P48431 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SOX2P48431 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX2P48431 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SOX2P48431 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX2P48431 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX2P48431 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SOX2P48431 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX2P48431 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
SOX2P48431 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX2P48431 MIR574-201ENST00000385209 96 ntBASIC13.31□□□□□ -0.28
SOX2P48431 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX2P48431 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
SOX2P48431 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC13.31□□□□□ -0.28
SOX2P48431 SATB1-217ENST00000493952 626 ntTSL 3 BASIC13.31□□□□□ -0.28
SOX2P48431 SAMD11P1-201ENST00000571429 661 ntBASIC13.31□□□□□ -0.28
SOX2P48431 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX2P48431 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC13.31□□□□□ -0.28
SOX2P48431 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC13.31□□□□□ -0.28
SOX2P48431 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SOX2P48431 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX2P48431 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC13.31□□□□□ -0.28
SOX2P48431 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX2P48431 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC13.31□□□□□ -0.28
SOX2P48431 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
SOX2P48431 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX2P48431 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
SOX2P48431 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms