Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC15.27■□□□□ 0.04
HADHAP40939 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
HADHAP40939 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HADHAP40939 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC15.27■□□□□ 0.04
HADHAP40939 LILRP1-201ENST00000444199 1370 ntBASIC15.27■□□□□ 0.04
HADHAP40939 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HADHAP40939 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HADHAP40939 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HADHAP40939 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
HADHAP40939 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HADHAP40939 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
HADHAP40939 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC15.27■□□□□ 0.04
HADHAP40939 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HADHAP40939 EDF1-203ENST00000371649 790 ntTSL 2 BASIC15.27■□□□□ 0.04
HADHAP40939 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HADHAP40939 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC15.27■□□□□ 0.04
HADHAP40939 AC005225.4-201ENST00000557330 545 ntBASIC15.27■□□□□ 0.04
HADHAP40939 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC15.27■□□□□ 0.04
HADHAP40939 IFT20-206ENST00000578122 834 ntTSL 2 BASIC15.27■□□□□ 0.04
HADHAP40939 IFT20-208ENST00000578985 831 ntTSL 3 BASIC15.27■□□□□ 0.04
HADHAP40939 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC15.27■□□□□ 0.04
HADHAP40939 SPDYE22P-201ENST00000582158 798 ntBASIC15.27■□□□□ 0.04
HADHAP40939 PRSS30P-206ENST00000641773 873 ntBASIC15.27■□□□□ 0.04
HADHAP40939 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
HADHAP40939 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HADHAP40939 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HADHAP40939 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
HADHAP40939 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
HADHAP40939 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC15.27■□□□□ 0.03
HADHAP40939 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HADHAP40939 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.03
HADHAP40939 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HADHAP40939 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC15.27■□□□□ 0.03
HADHAP40939 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC15.27■□□□□ 0.03
HADHAP40939 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HADHAP40939 AC113367.3-201ENST00000508316 1912 ntBASIC15.27■□□□□ 0.03
HADHAP40939 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC15.27■□□□□ 0.03
HADHAP40939 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
HADHAP40939 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC15.27■□□□□ 0.03
HADHAP40939 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.27■□□□□ 0.03
HADHAP40939 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HADHAP40939 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HADHAP40939 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HADHAP40939 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
HADHAP40939 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
HADHAP40939 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC15.26■□□□□ 0.03
HADHAP40939 PES1-204ENST00000402284 2144 ntTSL 5 BASIC15.26■□□□□ 0.03
HADHAP40939 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC15.26■□□□□ 0.03
HADHAP40939 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC15.26■□□□□ 0.03
HADHAP40939 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HADHAP40939 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HADHAP40939 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HADHAP40939 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HADHAP40939 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HADHAP40939 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HADHAP40939 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HADHAP40939 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC15.26■□□□□ 0.03
HADHAP40939 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC15.26■□□□□ 0.03
HADHAP40939 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
HADHAP40939 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HADHAP40939 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HADHAP40939 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HADHAP40939 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
HADHAP40939 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC15.26■□□□□ 0.03
HADHAP40939 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
HADHAP40939 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
HADHAP40939 AP001582.1-201ENST00000525856 295 ntBASIC15.26■□□□□ 0.03
HADHAP40939 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HADHAP40939 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC15.26■□□□□ 0.03
HADHAP40939 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC15.26■□□□□ 0.03
HADHAP40939 CTBP2P3-201ENST00000585629 1255 ntBASIC15.26■□□□□ 0.03
HADHAP40939 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
HADHAP40939 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HADHAP40939 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HADHAP40939 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
HADHAP40939 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
HADHAP40939 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
HADHAP40939 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HADHAP40939 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
HADHAP40939 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HADHAP40939 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC15.26■□□□□ 0.03
HADHAP40939 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HADHAP40939 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
HADHAP40939 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HADHAP40939 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
HADHAP40939 SF1-209ENST00000433274 2317 ntTSL 2 BASIC15.26■□□□□ 0.03
HADHAP40939 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC15.26■□□□□ 0.03
HADHAP40939 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC15.26■□□□□ 0.03
HADHAP40939 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
HADHAP40939 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HADHAP40939 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
HADHAP40939 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
HADHAP40939 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HADHAP40939 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HADHAP40939 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC15.25■□□□□ 0.03
HADHAP40939 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HADHAP40939 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HADHAP40939 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HADHAP40939 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
HADHAP40939 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms