Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC15.21■□□□□ 0.03
PTPN4P29074 OR8S1-201ENST00000310194 1080 ntBASIC15.21■□□□□ 0.03
PTPN4P29074 SPDYE19P-201ENST00000338590 713 ntBASIC15.21■□□□□ 0.03
PTPN4P29074 OSM-203ENST00000403463 464 ntTSL 3 BASIC15.21■□□□□ 0.03
PTPN4P29074 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
PTPN4P29074 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC15.21■□□□□ 0.03
PTPN4P29074 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PTPN4P29074 AC093004.1-201ENST00000508850 424 ntBASIC15.21■□□□□ 0.03
PTPN4P29074 SDHAP3-202ENST00000515467 728 ntBASIC15.21■□□□□ 0.03
PTPN4P29074 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PTPN4P29074 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC15.21■□□□□ 0.03
PTPN4P29074 TEX48-202ENST00000612244 662 ntTSL 3 BASIC15.21■□□□□ 0.03
PTPN4P29074 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC15.21■□□□□ 0.03
PTPN4P29074 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTPN4P29074 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTPN4P29074 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTPN4P29074 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC15.21■□□□□ 0.03
PTPN4P29074 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC15.21■□□□□ 0.03
PTPN4P29074 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PTPN4P29074 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
PTPN4P29074 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTPN4P29074 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
PTPN4P29074 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
PTPN4P29074 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC15.21■□□□□ 0.02
PTPN4P29074 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.02
PTPN4P29074 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
PTPN4P29074 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC15.21■□□□□ 0.02
PTPN4P29074 AC138969.3-201ENST00000546612 1459 ntBASIC15.2■□□□□ 0.02
PTPN4P29074 AC138932.2-201ENST00000548268 1459 ntBASIC15.2■□□□□ 0.02
PTPN4P29074 AC126755.4-201ENST00000549796 1459 ntBASIC15.2■□□□□ 0.02
PTPN4P29074 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN4P29074 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC15.2■□□□□ 0.02
PTPN4P29074 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC15.2■□□□□ 0.02
PTPN4P29074 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC15.2■□□□□ 0.02
PTPN4P29074 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
PTPN4P29074 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN4P29074 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN4P29074 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN4P29074 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC15.2■□□□□ 0.02
PTPN4P29074 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC15.2■□□□□ 0.02
PTPN4P29074 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
PTPN4P29074 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC15.2■□□□□ 0.02
PTPN4P29074 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN4P29074 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN4P29074 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC15.2■□□□□ 0.02
PTPN4P29074 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN4P29074 DGCR9-201ENST00000609630 2415 ntBASIC15.2■□□□□ 0.02
PTPN4P29074 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN4P29074 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC15.2■□□□□ 0.02
PTPN4P29074 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN4P29074 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN4P29074 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN4P29074 AC114501.2-201ENST00000439631 535 ntBASIC15.2■□□□□ 0.02
PTPN4P29074 RAB35-202ENST00000534951 939 ntTSL 2 BASIC15.2■□□□□ 0.02
PTPN4P29074 AC243562.2-201ENST00000561247 970 ntBASIC15.2■□□□□ 0.02
PTPN4P29074 MIR6069-201ENST00000620069 79 ntBASIC15.2■□□□□ 0.02
PTPN4P29074 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN4P29074 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN4P29074 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
PTPN4P29074 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN4P29074 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC15.2■□□□□ 0.02
PTPN4P29074 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN4P29074 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC15.2■□□□□ 0.02
PTPN4P29074 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC15.2■□□□□ 0.02
PTPN4P29074 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC15.2■□□□□ 0.02
PTPN4P29074 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN4P29074 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC15.2■□□□□ 0.02
PTPN4P29074 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
PTPN4P29074 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN4P29074 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
PTPN4P29074 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN4P29074 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC15.2■□□□□ 0.02
PTPN4P29074 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN4P29074 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC15.19■□□□□ 0.02
PTPN4P29074 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN4P29074 MST1P2-201ENST00000457982 2291 ntBASIC15.19■□□□□ 0.02
PTPN4P29074 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC15.19■□□□□ 0.02
PTPN4P29074 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN4P29074 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC15.19■□□□□ 0.02
PTPN4P29074 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC15.19■□□□□ 0.02
PTPN4P29074 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN4P29074 FES-203ENST00000394302 2133 ntTSL 5 BASIC15.19■□□□□ 0.02
PTPN4P29074 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN4P29074 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN4P29074 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN4P29074 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC15.19■□□□□ 0.02
PTPN4P29074 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN4P29074 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN4P29074 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC15.19■□□□□ 0.02
PTPN4P29074 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
PTPN4P29074 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC15.19■□□□□ 0.02
PTPN4P29074 NAA50-208ENST00000497255 789 ntTSL 5 BASIC15.19■□□□□ 0.02
PTPN4P29074 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN4P29074 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC15.19■□□□□ 0.02
PTPN4P29074 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
PTPN4P29074 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC15.19■□□□□ 0.02
PTPN4P29074 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN4P29074 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN4P29074 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN4P29074 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms