Protein–RNA interactions for Protein: P16234

PDGFRA, Platelet-derived growth factor receptor alpha, humanhuman

Predictions only

Length 1,089 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRAP16234 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFRAP16234 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFRAP16234 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
PDGFRAP16234 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFRAP16234 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
PDGFRAP16234 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
PDGFRAP16234 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
PDGFRAP16234 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
PDGFRAP16234 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFRAP16234 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFRAP16234 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC15.81■□□□□ 0.12
PDGFRAP16234 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFRAP16234 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
PDGFRAP16234 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFRAP16234 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC15.81■□□□□ 0.12
PDGFRAP16234 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC15.81■□□□□ 0.12
PDGFRAP16234 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFRAP16234 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFRAP16234 AC068587.3-201ENST00000526613 355 ntBASIC15.81■□□□□ 0.12
PDGFRAP16234 SLC25A47P1-201ENST00000531577 414 ntBASIC15.81■□□□□ 0.12
PDGFRAP16234 RAB43P1-201ENST00000561790 589 ntBASIC15.81■□□□□ 0.12
PDGFRAP16234 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC15.81■□□□□ 0.12
PDGFRAP16234 APOC4-201ENST00000591600 348 ntTSL 3 BASIC15.81■□□□□ 0.12
PDGFRAP16234 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC15.81■□□□□ 0.12
PDGFRAP16234 BTNL10-201ENST00000595971 695 ntBASIC15.81■□□□□ 0.12
PDGFRAP16234 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC15.81■□□□□ 0.12
PDGFRAP16234 AC097376.2-205ENST00000610159 5334 ntBASIC15.81■□□□□ 0.12
PDGFRAP16234 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC15.81■□□□□ 0.12
PDGFRAP16234 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFRAP16234 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC15.81■□□□□ 0.12
PDGFRAP16234 AC018665.1-201ENST00000622927 1362 ntBASIC15.81■□□□□ 0.12
PDGFRAP16234 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
PDGFRAP16234 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC15.81■□□□□ 0.12
PDGFRAP16234 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFRAP16234 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC15.81■□□□□ 0.12
PDGFRAP16234 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFRAP16234 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC15.81■□□□□ 0.12
PDGFRAP16234 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFRAP16234 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFRAP16234 LINC00552-201ENST00000625151 2579 ntBASIC15.81■□□□□ 0.12
PDGFRAP16234 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDGFRAP16234 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC15.8■□□□□ 0.12
PDGFRAP16234 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC15.8■□□□□ 0.12
PDGFRAP16234 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
PDGFRAP16234 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC15.8■□□□□ 0.12
PDGFRAP16234 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
PDGFRAP16234 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PDGFRAP16234 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PDGFRAP16234 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC15.8■□□□□ 0.12
PDGFRAP16234 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
PDGFRAP16234 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDGFRAP16234 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PDGFRAP16234 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDGFRAP16234 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC15.8■□□□□ 0.12
PDGFRAP16234 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
PDGFRAP16234 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDGFRAP16234 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDGFRAP16234 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PDGFRAP16234 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDGFRAP16234 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDGFRAP16234 AC079776.1-201ENST00000401540 1152 ntBASIC15.8■□□□□ 0.12
PDGFRAP16234 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
PDGFRAP16234 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC15.8■□□□□ 0.12
PDGFRAP16234 RPL28-203ENST00000428193 573 ntTSL 2 BASIC15.8■□□□□ 0.12
PDGFRAP16234 RPL28-204ENST00000431533 590 ntTSL 2 BASIC15.8■□□□□ 0.12
PDGFRAP16234 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC15.8■□□□□ 0.12
PDGFRAP16234 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC15.8■□□□□ 0.12
PDGFRAP16234 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
PDGFRAP16234 RPL28-207ENST00000558815 616 ntTSL 2 BASIC15.8■□□□□ 0.12
PDGFRAP16234 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDGFRAP16234 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC15.8■□□□□ 0.12
PDGFRAP16234 AC233724.13-201ENST00000598383 410 ntBASIC15.8■□□□□ 0.12
PDGFRAP16234 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDGFRAP16234 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC15.8■□□□□ 0.12
PDGFRAP16234 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDGFRAP16234 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDGFRAP16234 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC15.8■□□□□ 0.12
PDGFRAP16234 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC15.8■□□□□ 0.12
PDGFRAP16234 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDGFRAP16234 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.8■□□□□ 0.12
PDGFRAP16234 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDGFRAP16234 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
PDGFRAP16234 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
PDGFRAP16234 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC15.8■□□□□ 0.12
PDGFRAP16234 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDGFRAP16234 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
PDGFRAP16234 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PDGFRAP16234 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
PDGFRAP16234 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
PDGFRAP16234 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
PDGFRAP16234 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PDGFRAP16234 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC15.79■□□□□ 0.12
PDGFRAP16234 AC232323.1-201ENST00000540724 2099 ntBASIC15.79■□□□□ 0.12
PDGFRAP16234 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC15.79■□□□□ 0.12
PDGFRAP16234 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
PDGFRAP16234 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC15.79■□□□□ 0.12
PDGFRAP16234 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PDGFRAP16234 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PDGFRAP16234 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC15.79■□□□□ 0.12
PDGFRAP16234 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms