Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HMGB3O15347 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HMGB3O15347 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HMGB3O15347 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
HMGB3O15347 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HMGB3O15347 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HMGB3O15347 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
HMGB3O15347 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HMGB3O15347 RNF125-201ENST00000217740 6020 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HMGB3O15347 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HMGB3O15347 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HMGB3O15347 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC12.18□□□□□ -0.46
HMGB3O15347 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC12.18□□□□□ -0.46
HMGB3O15347 PROKR1-201ENST00000303786 4273 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
HMGB3O15347 GPRASP1-201ENST00000361600 5971 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
HMGB3O15347 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
HMGB3O15347 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC12.18□□□□□ -0.46
HMGB3O15347 ATP6V0CP3-201ENST00000417255 467 ntBASIC12.18□□□□□ -0.46
HMGB3O15347 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HMGB3O15347 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC12.18□□□□□ -0.46
HMGB3O15347 SAPCD2P3-201ENST00000455031 850 ntBASIC12.18□□□□□ -0.46
HMGB3O15347 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC12.18□□□□□ -0.46
HMGB3O15347 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC12.18□□□□□ -0.46
HMGB3O15347 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC12.18□□□□□ -0.46
HMGB3O15347 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC12.18□□□□□ -0.46
HMGB3O15347 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC12.18□□□□□ -0.46
HMGB3O15347 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC12.18□□□□□ -0.46
HMGB3O15347 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HMGB3O15347 CRY2-202ENST00000443527 4203 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
HMGB3O15347 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC12.18□□□□□ -0.46
HMGB3O15347 DYSF-208ENST00000410020 6657 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
HMGB3O15347 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HMGB3O15347 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
HMGB3O15347 FAM122B-202ENST00000343004 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
HMGB3O15347 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
HMGB3O15347 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HMGB3O15347 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
HMGB3O15347 DGCR9-201ENST00000609630 2415 ntBASIC12.18□□□□□ -0.46
HMGB3O15347 TNN-202ENST00000621086 4234 ntTSL 5 BASIC12.18□□□□□ -0.46
HMGB3O15347 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HMGB3O15347 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC12.18□□□□□ -0.46
HMGB3O15347 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HMGB3O15347 TPT1-212ENST00000530705 4735 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HMGB3O15347 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC12.18□□□□□ -0.46
HMGB3O15347 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HMGB3O15347 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC12.17□□□□□ -0.46
HMGB3O15347 SF1-209ENST00000433274 2317 ntTSL 2 BASIC12.17□□□□□ -0.46
HMGB3O15347 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC12.17□□□□□ -0.46
HMGB3O15347 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC12.17□□□□□ -0.46
HMGB3O15347 DSTN-201ENST00000246069 3617 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HMGB3O15347 MST1P2-201ENST00000457982 2291 ntBASIC12.17□□□□□ -0.46
HMGB3O15347 RBL1-202ENST00000373664 5684 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HMGB3O15347 LRRC57-201ENST00000323443 7351 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HMGB3O15347 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HMGB3O15347 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HMGB3O15347 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HMGB3O15347 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HMGB3O15347 DCLK3-203ENST00000636136 5446 ntTSL 5 BASIC12.17□□□□□ -0.46
HMGB3O15347 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
HMGB3O15347 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC12.17□□□□□ -0.46
HMGB3O15347 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
HMGB3O15347 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
HMGB3O15347 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC12.17□□□□□ -0.46
HMGB3O15347 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HMGB3O15347 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HMGB3O15347 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HMGB3O15347 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
HMGB3O15347 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HMGB3O15347 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC12.17□□□□□ -0.46
HMGB3O15347 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC12.17□□□□□ -0.46
HMGB3O15347 THTPA-204ENST00000554970 569 ntTSL 4 BASIC12.17□□□□□ -0.46
HMGB3O15347 THTPA-206ENST00000556015 535 ntTSL 3 BASIC12.17□□□□□ -0.46
HMGB3O15347 AC061975.2-201ENST00000581722 295 ntBASIC12.17□□□□□ -0.46
HMGB3O15347 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC12.17□□□□□ -0.46
HMGB3O15347 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC12.17□□□□□ -0.46
HMGB3O15347 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
HMGB3O15347 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HMGB3O15347 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC12.17□□□□□ -0.46
HMGB3O15347 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC12.17□□□□□ -0.46
HMGB3O15347 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC12.17□□□□□ -0.46
HMGB3O15347 KCNMA1-216ENST00000457953 3976 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
HMGB3O15347 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
HMGB3O15347 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HMGB3O15347 KRT8P37-201ENST00000451609 1420 ntBASIC12.17□□□□□ -0.46
HMGB3O15347 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
HMGB3O15347 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC12.17□□□□□ -0.46
HMGB3O15347 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HMGB3O15347 Z82170.1-201ENST00000625081 3192 ntBASIC12.17□□□□□ -0.46
HMGB3O15347 KDM6A-201ENST00000377967 5438 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HMGB3O15347 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HMGB3O15347 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
HMGB3O15347 SPATS2-223ENST00000553127 3320 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HMGB3O15347 ROBO2-209ENST00000487694 5919 ntTSL 5 BASIC12.17□□□□□ -0.46
HMGB3O15347 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
HMGB3O15347 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HMGB3O15347 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HMGB3O15347 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
HMGB3O15347 CIPC-201ENST00000361786 4486 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HMGB3O15347 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC12.17□□□□□ -0.46
HMGB3O15347 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms