Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
SIX2Q9NPC8 AC245100.3-201ENST00000441281 285 ntBASIC16.08■□□□□ 0.16
SIX2Q9NPC8 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC16.08■□□□□ 0.16
SIX2Q9NPC8 AC068587.3-201ENST00000526613 355 ntBASIC16.08■□□□□ 0.16
SIX2Q9NPC8 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SIX2Q9NPC8 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SIX2Q9NPC8 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC16.08■□□□□ 0.16
SIX2Q9NPC8 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SIX2Q9NPC8 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC16.08■□□□□ 0.16
SIX2Q9NPC8 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC16.08■□□□□ 0.16
SIX2Q9NPC8 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
SIX2Q9NPC8 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SIX2Q9NPC8 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SIX2Q9NPC8 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
SIX2Q9NPC8 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
SIX2Q9NPC8 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
SIX2Q9NPC8 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
SIX2Q9NPC8 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SIX2Q9NPC8 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
SIX2Q9NPC8 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SIX2Q9NPC8 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SIX2Q9NPC8 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
SIX2Q9NPC8 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
SIX2Q9NPC8 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SIX2Q9NPC8 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SIX2Q9NPC8 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
SIX2Q9NPC8 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SIX2Q9NPC8 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SIX2Q9NPC8 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 AC012617.1-204ENST00000586340 2305 ntBASIC16.07■□□□□ 0.16
SIX2Q9NPC8 AC006504.5-208ENST00000588784 2401 ntBASIC16.07■□□□□ 0.16
SIX2Q9NPC8 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 AL391280.1-201ENST00000506969 1062 ntBASIC16.07■□□□□ 0.16
SIX2Q9NPC8 TDH-203ENST00000531764 1110 ntBASIC16.07■□□□□ 0.16
SIX2Q9NPC8 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 AC138466.3-201ENST00000619983 221 ntBASIC16.07■□□□□ 0.16
SIX2Q9NPC8 ENPP7P14-201ENST00000621765 1040 ntBASIC16.07■□□□□ 0.16
SIX2Q9NPC8 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 AL136172.1-201ENST00000598590 1394 ntBASIC16.07■□□□□ 0.16
SIX2Q9NPC8 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 USP4-203ENST00000415188 1454 ntTSL 3 BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 NORAD-201ENST00000565493 5339 ntBASIC16.07■□□□□ 0.16
SIX2Q9NPC8 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 MYADML-201ENST00000474610 2147 ntBASIC16.07■□□□□ 0.16
SIX2Q9NPC8 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SIX2Q9NPC8 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 MRPL37P1-201ENST00000592451 1337 ntBASIC16.06■□□□□ 0.16
SIX2Q9NPC8 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 PNKD-204ENST00000436005 978 ntTSL 5 BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 RN7SL837P-201ENST00000463010 287 ntBASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms