Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC42Q96M95 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC42Q96M95 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC42Q96M95 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC42Q96M95 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC42Q96M95 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC42Q96M95 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC42Q96M95 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC42Q96M95 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC42Q96M95 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC42Q96M95 TUBB3P1-201ENST00000405796 1332 ntBASIC16.3■□□□□ 0.2
CCDC42Q96M95 AC087499.5-201ENST00000452760 1342 ntBASIC16.3■□□□□ 0.2
CCDC42Q96M95 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
CCDC42Q96M95 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC16.3■□□□□ 0.2
CCDC42Q96M95 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC16.3■□□□□ 0.2
CCDC42Q96M95 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC16.3■□□□□ 0.2
CCDC42Q96M95 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC42Q96M95 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
CCDC42Q96M95 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC42Q96M95 CNN2P2-201ENST00000443536 909 ntBASIC16.3■□□□□ 0.2
CCDC42Q96M95 CNN2P3-201ENST00000450201 906 ntBASIC16.3■□□□□ 0.2
CCDC42Q96M95 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC16.3■□□□□ 0.2
CCDC42Q96M95 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
CCDC42Q96M95 SLBP-205ENST00000488267 987 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC42Q96M95 AC027369.6-201ENST00000525520 931 ntBASIC16.3■□□□□ 0.2
CCDC42Q96M95 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CCDC42Q96M95 SNHG9-202ENST00000564014 471 ntBASIC16.3■□□□□ 0.2
CCDC42Q96M95 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC42Q96M95 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC42Q96M95 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC42Q96M95 AL136317.3-201ENST00000618497 906 ntBASIC16.3■□□□□ 0.2
CCDC42Q96M95 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC42Q96M95 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC42Q96M95 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC42Q96M95 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC42Q96M95 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC42Q96M95 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC42Q96M95 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC42Q96M95 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CCDC42Q96M95 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC42Q96M95 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC42Q96M95 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC42Q96M95 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CCDC42Q96M95 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC42Q96M95 AC023090.2-201ENST00000625182 2110 ntBASIC16.3■□□□□ 0.2
CCDC42Q96M95 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC42Q96M95 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC16.3■□□□□ 0.2
CCDC42Q96M95 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CCDC42Q96M95 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC42Q96M95 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC16.3■□□□□ 0.2
CCDC42Q96M95 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC42Q96M95 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC42Q96M95 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC42Q96M95 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC42Q96M95 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC42Q96M95 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC42Q96M95 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC42Q96M95 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC42Q96M95 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC42Q96M95 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC16.29■□□□□ 0.2
CCDC42Q96M95 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC42Q96M95 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC16.29■□□□□ 0.2
CCDC42Q96M95 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC42Q96M95 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC42Q96M95 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC42Q96M95 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC42Q96M95 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC42Q96M95 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC16.29■□□□□ 0.2
CCDC42Q96M95 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC16.29■□□□□ 0.2
CCDC42Q96M95 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC42Q96M95 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC42Q96M95 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC16.29■□□□□ 0.2
CCDC42Q96M95 GAPDHP40-201ENST00000505218 1006 ntBASIC16.29■□□□□ 0.2
CCDC42Q96M95 AC022447.6-201ENST00000515522 438 ntBASIC16.29■□□□□ 0.2
CCDC42Q96M95 LY6E-204ENST00000519546 971 ntTSL 2 BASIC16.29■□□□□ 0.2
CCDC42Q96M95 AC069120.2-201ENST00000524091 540 ntBASIC16.29■□□□□ 0.2
CCDC42Q96M95 AC109322.1-201ENST00000524499 1264 ntBASIC16.29■□□□□ 0.2
CCDC42Q96M95 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC16.29■□□□□ 0.2
CCDC42Q96M95 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC16.29■□□□□ 0.2
CCDC42Q96M95 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC16.29■□□□□ 0.2
CCDC42Q96M95 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC42Q96M95 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC16.29■□□□□ 0.2
CCDC42Q96M95 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC42Q96M95 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.29■□□□□ 0.2
CCDC42Q96M95 AC027612.4-201ENST00000605371 583 ntBASIC16.29■□□□□ 0.2
CCDC42Q96M95 5S_rRNA.22-201ENST00000614916 106 ntBASIC16.29■□□□□ 0.2
CCDC42Q96M95 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CCDC42Q96M95 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC42Q96M95 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC42Q96M95 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC42Q96M95 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC42Q96M95 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CCDC42Q96M95 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC42Q96M95 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC16.29■□□□□ 0.2
CCDC42Q96M95 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC16.29■□□□□ 0.2
CCDC42Q96M95 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC16.29■□□□□ 0.2
CCDC42Q96M95 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC42Q96M95 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC42Q96M95 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC16.29■□□□□ 0.2
CCDC42Q96M95 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms