Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC19.97■□□□□ 0.79
KRT28Q7Z3Y7 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 STK16-203ENST00000409516 895 ntTSL 2 BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 AC138701.2-201ENST00000553634 226 ntBASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 AC007952.4-201ENST00000573866 637 ntBASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 MIR4472-1-201ENST00000584349 80 ntBASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 AP000322.3-201ENST00000608665 388 ntBASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 ETV2-207ENST00000619399 994 ntTSL 5 BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 STRN-202ENST00000379213 2254 ntTSL 5 BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
KRT28Q7Z3Y7 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC19.95■□□□□ 0.78
KRT28Q7Z3Y7 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
KRT28Q7Z3Y7 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
KRT28Q7Z3Y7 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
KRT28Q7Z3Y7 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
KRT28Q7Z3Y7 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
KRT28Q7Z3Y7 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
KRT28Q7Z3Y7 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC19.95■□□□□ 0.78
KRT28Q7Z3Y7 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
KRT28Q7Z3Y7 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC19.95■□□□□ 0.78
KRT28Q7Z3Y7 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
KRT28Q7Z3Y7 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
KRT28Q7Z3Y7 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC19.95■□□□□ 0.78
KRT28Q7Z3Y7 GCSHP3-201ENST00000431120 391 ntBASIC19.95■□□□□ 0.78
KRT28Q7Z3Y7 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC19.95■□□□□ 0.78
KRT28Q7Z3Y7 AC093909.3-201ENST00000504783 336 ntBASIC19.95■□□□□ 0.78
KRT28Q7Z3Y7 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
KRT28Q7Z3Y7 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
KRT28Q7Z3Y7 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
KRT28Q7Z3Y7 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
KRT28Q7Z3Y7 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC19.95■□□□□ 0.78
KRT28Q7Z3Y7 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
KRT28Q7Z3Y7 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC19.95■□□□□ 0.78
KRT28Q7Z3Y7 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
KRT28Q7Z3Y7 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
KRT28Q7Z3Y7 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
KRT28Q7Z3Y7 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
KRT28Q7Z3Y7 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
KRT28Q7Z3Y7 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
KRT28Q7Z3Y7 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
KRT28Q7Z3Y7 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
KRT28Q7Z3Y7 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC19.94■□□□□ 0.78
KRT28Q7Z3Y7 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
KRT28Q7Z3Y7 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
KRT28Q7Z3Y7 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
KRT28Q7Z3Y7 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
KRT28Q7Z3Y7 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
KRT28Q7Z3Y7 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
KRT28Q7Z3Y7 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
KRT28Q7Z3Y7 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
KRT28Q7Z3Y7 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
KRT28Q7Z3Y7 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
KRT28Q7Z3Y7 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
KRT28Q7Z3Y7 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
KRT28Q7Z3Y7 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
KRT28Q7Z3Y7 HCG27-204ENST00000424675 895 ntTSL 3 BASIC19.94■□□□□ 0.78
KRT28Q7Z3Y7 AQP7P5-201ENST00000428759 1049 ntBASIC19.94■□□□□ 0.78
KRT28Q7Z3Y7 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC19.94■□□□□ 0.78
KRT28Q7Z3Y7 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC19.94■□□□□ 0.78
KRT28Q7Z3Y7 AQP7P4-201ENST00000447083 1042 ntBASIC19.94■□□□□ 0.78
KRT28Q7Z3Y7 AQP7P2-201ENST00000453967 1041 ntBASIC19.94■□□□□ 0.78
KRT28Q7Z3Y7 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms