Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP54Q70EL1 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC19.38■□□□□ 0.69
USP54Q70EL1 MECR-202ENST00000373791 2416 ntTSL 2 BASIC19.38■□□□□ 0.69
USP54Q70EL1 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
USP54Q70EL1 CCT8L1P-201ENST00000465400 1674 ntBASIC19.38■□□□□ 0.69
USP54Q70EL1 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP54Q70EL1 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP54Q70EL1 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
USP54Q70EL1 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
USP54Q70EL1 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.38■□□□□ 0.69
USP54Q70EL1 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USP54Q70EL1 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USP54Q70EL1 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USP54Q70EL1 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC19.38■□□□□ 0.69
USP54Q70EL1 AC095040.1-201ENST00000513286 675 ntBASIC19.38■□□□□ 0.69
USP54Q70EL1 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC19.38■□□□□ 0.69
USP54Q70EL1 CMC2-204ENST00000562713 573 ntTSL 3 BASIC19.38■□□□□ 0.69
USP54Q70EL1 CMC2-209ENST00000565108 399 ntTSL 2 BASIC19.38■□□□□ 0.69
USP54Q70EL1 MIR3180-2-201ENST00000581748 88 ntBASIC19.38■□□□□ 0.69
USP54Q70EL1 AC140113.1-201ENST00000603467 169 ntBASIC19.38■□□□□ 0.69
USP54Q70EL1 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC19.38■□□□□ 0.69
USP54Q70EL1 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP54Q70EL1 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USP54Q70EL1 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP54Q70EL1 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP54Q70EL1 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP54Q70EL1 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USP54Q70EL1 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC19.38■□□□□ 0.69
USP54Q70EL1 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP54Q70EL1 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
USP54Q70EL1 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
USP54Q70EL1 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP54Q70EL1 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP54Q70EL1 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP54Q70EL1 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP54Q70EL1 AC004837.1-201ENST00000446267 564 ntBASIC19.37■□□□□ 0.69
USP54Q70EL1 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC19.37■□□□□ 0.69
USP54Q70EL1 RN7SL564P-201ENST00000496309 250 ntBASIC19.37■□□□□ 0.69
USP54Q70EL1 RPS23-204ENST00000507980 836 ntTSL 2 BASIC19.37■□□□□ 0.69
USP54Q70EL1 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC19.37■□□□□ 0.69
USP54Q70EL1 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC19.37■□□□□ 0.69
USP54Q70EL1 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP54Q70EL1 GPI-205ENST00000586425 1799 ntTSL 5 BASIC19.37■□□□□ 0.69
USP54Q70EL1 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP54Q70EL1 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP54Q70EL1 CICP6-201ENST00000457191 2729 ntBASIC19.37■□□□□ 0.69
USP54Q70EL1 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP54Q70EL1 AJ011931.1-201ENST00000618749 2492 ntBASIC19.37■□□□□ 0.69
USP54Q70EL1 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC19.37■□□□□ 0.69
USP54Q70EL1 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC19.37■□□□□ 0.69
USP54Q70EL1 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC19.37■□□□□ 0.69
USP54Q70EL1 MYADML-201ENST00000474610 2147 ntBASIC19.37■□□□□ 0.69
USP54Q70EL1 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC19.37■□□□□ 0.69
USP54Q70EL1 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP54Q70EL1 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP54Q70EL1 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
USP54Q70EL1 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
USP54Q70EL1 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP54Q70EL1 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP54Q70EL1 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP54Q70EL1 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP54Q70EL1 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC19.36■□□□□ 0.69
USP54Q70EL1 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP54Q70EL1 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC19.36■□□□□ 0.69
USP54Q70EL1 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC19.36■□□□□ 0.69
USP54Q70EL1 ALG1L13P-202ENST00000519320 584 ntBASIC19.36■□□□□ 0.69
USP54Q70EL1 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC19.36■□□□□ 0.69
USP54Q70EL1 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC19.36■□□□□ 0.69
USP54Q70EL1 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC19.36■□□□□ 0.69
USP54Q70EL1 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC19.36■□□□□ 0.69
USP54Q70EL1 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC19.36■□□□□ 0.69
USP54Q70EL1 AL591122.2-201ENST00000624125 1853 ntBASIC19.36■□□□□ 0.69
USP54Q70EL1 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP54Q70EL1 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP54Q70EL1 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
USP54Q70EL1 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
USP54Q70EL1 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC19.36■□□□□ 0.69
USP54Q70EL1 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP54Q70EL1 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC19.36■□□□□ 0.69
USP54Q70EL1 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP54Q70EL1 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP54Q70EL1 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP54Q70EL1 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC19.36■□□□□ 0.69
USP54Q70EL1 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP54Q70EL1 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC19.36■□□□□ 0.69
USP54Q70EL1 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP54Q70EL1 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP54Q70EL1 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP54Q70EL1 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP54Q70EL1 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP54Q70EL1 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP54Q70EL1 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
USP54Q70EL1 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
USP54Q70EL1 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
USP54Q70EL1 RPL3P2-204ENST00000413027 1203 ntBASIC19.36■□□□□ 0.69
USP54Q70EL1 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC19.36■□□□□ 0.69
USP54Q70EL1 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC19.36■□□□□ 0.69
USP54Q70EL1 AC068867.1-201ENST00000559855 150 ntBASIC19.36■□□□□ 0.69
USP54Q70EL1 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC19.36■□□□□ 0.69
USP54Q70EL1 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms