Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC19.21■□□□□ 0.67
COL18A1P39060 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL18A1P39060 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
COL18A1P39060 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL18A1P39060 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC19.2■□□□□ 0.66
COL18A1P39060 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
COL18A1P39060 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL18A1P39060 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL18A1P39060 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL18A1P39060 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL18A1P39060 TEKT4P2-202ENST00000559466 1312 ntBASIC19.2■□□□□ 0.66
COL18A1P39060 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC19.2■□□□□ 0.66
COL18A1P39060 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
COL18A1P39060 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC19.2■□□□□ 0.66
COL18A1P39060 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
COL18A1P39060 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC19.2■□□□□ 0.66
COL18A1P39060 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC19.2■□□□□ 0.66
COL18A1P39060 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL18A1P39060 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
COL18A1P39060 AC010976.2-201ENST00000609697 852 ntBASIC19.2■□□□□ 0.66
COL18A1P39060 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
COL18A1P39060 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL18A1P39060 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL18A1P39060 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL18A1P39060 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL18A1P39060 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL18A1P39060 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL18A1P39060 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL18A1P39060 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL18A1P39060 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL18A1P39060 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL18A1P39060 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC19.2■□□□□ 0.66
COL18A1P39060 DOC2GP-204ENST00000639052 2548 ntBASIC19.19■□□□□ 0.66
COL18A1P39060 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL18A1P39060 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL18A1P39060 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL18A1P39060 AC098934.1-203ENST00000442868 1262 ntBASIC19.19■□□□□ 0.66
COL18A1P39060 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL18A1P39060 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
COL18A1P39060 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC19.19■□□□□ 0.66
COL18A1P39060 KRT8P2-201ENST00000556193 944 ntBASIC19.19■□□□□ 0.66
COL18A1P39060 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC19.19■□□□□ 0.66
COL18A1P39060 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL18A1P39060 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL18A1P39060 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL18A1P39060 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL18A1P39060 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL18A1P39060 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL18A1P39060 LAP3P2-201ENST00000454686 1454 ntBASIC19.19■□□□□ 0.66
COL18A1P39060 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
COL18A1P39060 KRT18P46-201ENST00000435568 1279 ntBASIC19.19■□□□□ 0.66
COL18A1P39060 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC19.19■□□□□ 0.66
COL18A1P39060 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC19.19■□□□□ 0.66
COL18A1P39060 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL18A1P39060 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
COL18A1P39060 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL18A1P39060 PPT1-215ENST00000641471 2368 ntBASIC19.18■□□□□ 0.66
COL18A1P39060 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
COL18A1P39060 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL18A1P39060 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL18A1P39060 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
COL18A1P39060 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
COL18A1P39060 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC19.18■□□□□ 0.66
COL18A1P39060 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL18A1P39060 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC19.18■□□□□ 0.66
COL18A1P39060 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL18A1P39060 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC19.18■□□□□ 0.66
COL18A1P39060 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL18A1P39060 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
COL18A1P39060 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL18A1P39060 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL18A1P39060 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL18A1P39060 AC015688.4-201ENST00000580780 1647 ntBASIC19.18■□□□□ 0.66
COL18A1P39060 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC19.18■□□□□ 0.66
COL18A1P39060 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC19.18■□□□□ 0.66
COL18A1P39060 LCK-206ENST00000373564 2137 ntTSL 5 BASIC19.18■□□□□ 0.66
COL18A1P39060 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC19.18■□□□□ 0.66
COL18A1P39060 RPL35P9-201ENST00000446059 350 ntBASIC19.18■□□□□ 0.66
COL18A1P39060 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
COL18A1P39060 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC19.18■□□□□ 0.66
COL18A1P39060 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC19.18■□□□□ 0.66
COL18A1P39060 AL132994.1-201ENST00000554098 400 ntBASIC19.18■□□□□ 0.66
COL18A1P39060 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC19.18■□□□□ 0.66
COL18A1P39060 RPS5-204ENST00000598098 536 ntTSL 2 BASIC19.18■□□□□ 0.66
COL18A1P39060 ETV2-207ENST00000619399 994 ntTSL 5 BASIC19.18■□□□□ 0.66
COL18A1P39060 ST5-261ENST00000626808 1071 ntTSL 5 BASIC19.18■□□□□ 0.66
COL18A1P39060 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC19.18■□□□□ 0.66
COL18A1P39060 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
COL18A1P39060 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
COL18A1P39060 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
COL18A1P39060 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL18A1P39060 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC19.18■□□□□ 0.66
COL18A1P39060 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
COL18A1P39060 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL18A1P39060 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL18A1P39060 AREG-202ENST00000502307 956 ntTSL 5 BASIC19.17■□□□□ 0.66
COL18A1P39060 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL18A1P39060 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC19.17■□□□□ 0.66
COL18A1P39060 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC19.17■□□□□ 0.66
COL18A1P39060 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 73 ms