Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC18.35■□□□□ 0.53
COL5A3P25940 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC18.35■□□□□ 0.53
COL5A3P25940 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC18.34■□□□□ 0.53
COL5A3P25940 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC18.34■□□□□ 0.53
COL5A3P25940 PPT1-215ENST00000641471 2368 ntBASIC18.34■□□□□ 0.53
COL5A3P25940 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL5A3P25940 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL5A3P25940 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL5A3P25940 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC18.34■□□□□ 0.53
COL5A3P25940 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC18.34■□□□□ 0.53
COL5A3P25940 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
COL5A3P25940 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
COL5A3P25940 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
COL5A3P25940 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL5A3P25940 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC18.34■□□□□ 0.53
COL5A3P25940 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC18.34■□□□□ 0.53
COL5A3P25940 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL5A3P25940 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
COL5A3P25940 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
COL5A3P25940 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
COL5A3P25940 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
COL5A3P25940 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC18.34■□□□□ 0.53
COL5A3P25940 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
COL5A3P25940 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL5A3P25940 AC084018.2-201ENST00000613093 2607 ntBASIC18.34■□□□□ 0.53
COL5A3P25940 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC18.34■□□□□ 0.53
COL5A3P25940 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL5A3P25940 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
COL5A3P25940 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC18.34■□□□□ 0.53
COL5A3P25940 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC18.34■□□□□ 0.53
COL5A3P25940 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL5A3P25940 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC18.34■□□□□ 0.53
COL5A3P25940 HELLS-212ENST00000630929 400 ntTSL 5 BASIC18.34■□□□□ 0.53
COL5A3P25940 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
COL5A3P25940 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL5A3P25940 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL5A3P25940 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL5A3P25940 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL5A3P25940 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
COL5A3P25940 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
COL5A3P25940 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
COL5A3P25940 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
COL5A3P25940 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC18.33■□□□□ 0.53
COL5A3P25940 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC18.33■□□□□ 0.53
COL5A3P25940 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL5A3P25940 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL5A3P25940 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL5A3P25940 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL5A3P25940 AC015688.4-201ENST00000580780 1647 ntBASIC18.33■□□□□ 0.53
COL5A3P25940 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC18.33■□□□□ 0.52
COL5A3P25940 KRT18P46-201ENST00000435568 1279 ntBASIC18.33■□□□□ 0.52
COL5A3P25940 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC18.33■□□□□ 0.52
COL5A3P25940 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC18.33■□□□□ 0.52
COL5A3P25940 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL5A3P25940 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
COL5A3P25940 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC18.33■□□□□ 0.52
COL5A3P25940 AC002472.4-201ENST00000641915 272 ntBASIC18.33■□□□□ 0.52
COL5A3P25940 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL5A3P25940 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL5A3P25940 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC18.33■□□□□ 0.52
COL5A3P25940 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC18.33■□□□□ 0.52
COL5A3P25940 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
COL5A3P25940 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL5A3P25940 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL5A3P25940 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL5A3P25940 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL5A3P25940 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC18.33■□□□□ 0.52
COL5A3P25940 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
COL5A3P25940 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
COL5A3P25940 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL5A3P25940 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC18.32■□□□□ 0.52
COL5A3P25940 AC018638.5-201ENST00000450885 754 ntBASIC18.32■□□□□ 0.52
COL5A3P25940 AL135901.1-201ENST00000451812 333 ntBASIC18.32■□□□□ 0.52
COL5A3P25940 AC244197.1-201ENST00000456494 951 ntBASIC18.32■□□□□ 0.52
COL5A3P25940 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC18.32■□□□□ 0.52
COL5A3P25940 AREG-202ENST00000502307 956 ntTSL 5 BASIC18.32■□□□□ 0.52
COL5A3P25940 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC18.32■□□□□ 0.52
COL5A3P25940 EIF5AP2-201ENST00000585668 1047 ntBASIC18.32■□□□□ 0.52
COL5A3P25940 ETV2-207ENST00000619399 994 ntTSL 5 BASIC18.32■□□□□ 0.52
COL5A3P25940 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL5A3P25940 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
COL5A3P25940 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC18.32■□□□□ 0.52
COL5A3P25940 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL5A3P25940 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
COL5A3P25940 AL672207.1-201ENST00000328462 1570 ntBASIC18.32■□□□□ 0.52
COL5A3P25940 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC18.32■□□□□ 0.52
COL5A3P25940 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL5A3P25940 AC019109.1-201ENST00000401725 1874 ntBASIC18.32■□□□□ 0.52
COL5A3P25940 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC18.32■□□□□ 0.52
COL5A3P25940 CES3-203ENST00000543856 3178 ntTSL 2 BASIC18.32■□□□□ 0.52
COL5A3P25940 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL5A3P25940 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC18.32■□□□□ 0.52
COL5A3P25940 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL5A3P25940 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC18.32■□□□□ 0.52
COL5A3P25940 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL5A3P25940 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL5A3P25940 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL5A3P25940 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL5A3P25940 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
COL5A3P25940 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms