Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL3A1P02461 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC19.48■□□□□ 0.71
COL3A1P02461 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC19.48■□□□□ 0.71
COL3A1P02461 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC19.48■□□□□ 0.71
COL3A1P02461 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
COL3A1P02461 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL3A1P02461 KRT8P21-201ENST00000430398 1491 ntBASIC19.48■□□□□ 0.71
COL3A1P02461 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC19.48■□□□□ 0.71
COL3A1P02461 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
COL3A1P02461 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL3A1P02461 AC113367.3-201ENST00000508316 1912 ntBASIC19.48■□□□□ 0.71
COL3A1P02461 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC19.48■□□□□ 0.71
COL3A1P02461 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC19.48■□□□□ 0.71
COL3A1P02461 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL3A1P02461 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL3A1P02461 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL3A1P02461 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC19.48■□□□□ 0.71
COL3A1P02461 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL3A1P02461 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL3A1P02461 AC215219.1-201ENST00000400706 1817 ntBASIC19.48■□□□□ 0.71
COL3A1P02461 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
COL3A1P02461 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL3A1P02461 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC19.48■□□□□ 0.71
COL3A1P02461 AC011742.3-201ENST00000439053 820 ntBASIC19.48■□□□□ 0.71
COL3A1P02461 RN7SL11P-201ENST00000471305 293 ntBASIC19.48■□□□□ 0.71
COL3A1P02461 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL3A1P02461 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC19.48■□□□□ 0.71
COL3A1P02461 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC19.48■□□□□ 0.71
COL3A1P02461 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC19.48■□□□□ 0.71
COL3A1P02461 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
COL3A1P02461 AL136295.7-201ENST00000619226 1200 ntBASIC19.48■□□□□ 0.71
COL3A1P02461 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
COL3A1P02461 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL3A1P02461 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL3A1P02461 LINC01165-201ENST00000445190 1623 ntBASIC19.47■□□□□ 0.71
COL3A1P02461 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
COL3A1P02461 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC19.47■□□□□ 0.71
COL3A1P02461 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC19.47■□□□□ 0.71
COL3A1P02461 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
COL3A1P02461 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.47■□□□□ 0.71
COL3A1P02461 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
COL3A1P02461 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL3A1P02461 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
COL3A1P02461 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
COL3A1P02461 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL3A1P02461 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL3A1P02461 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL3A1P02461 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC19.47■□□□□ 0.71
COL3A1P02461 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
COL3A1P02461 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL3A1P02461 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL3A1P02461 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC19.47■□□□□ 0.71
COL3A1P02461 AL161932.2-201ENST00000435436 679 ntBASIC19.47■□□□□ 0.71
COL3A1P02461 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC19.47■□□□□ 0.71
COL3A1P02461 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC19.47■□□□□ 0.71
COL3A1P02461 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC19.47■□□□□ 0.71
COL3A1P02461 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL3A1P02461 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
COL3A1P02461 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL3A1P02461 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL3A1P02461 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL3A1P02461 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL3A1P02461 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC19.46■□□□□ 0.71
COL3A1P02461 AC140479.7-201ENST00000636301 2332 ntBASIC19.46■□□□□ 0.71
COL3A1P02461 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL3A1P02461 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.46■□□□□ 0.71
COL3A1P02461 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
COL3A1P02461 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC19.46■□□□□ 0.71
COL3A1P02461 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC19.46■□□□□ 0.71
COL3A1P02461 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
COL3A1P02461 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL3A1P02461 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL3A1P02461 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL3A1P02461 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL3A1P02461 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL3A1P02461 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC19.46■□□□□ 0.71
COL3A1P02461 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC19.46■□□□□ 0.71
COL3A1P02461 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL3A1P02461 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC19.46■□□□□ 0.71
COL3A1P02461 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
COL3A1P02461 RN7SKP214-201ENST00000364208 315 ntBASIC19.46■□□□□ 0.71
COL3A1P02461 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL3A1P02461 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL3A1P02461 NUP210P1-202ENST00000504322 710 ntBASIC19.46■□□□□ 0.71
COL3A1P02461 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC19.46■□□□□ 0.71
COL3A1P02461 NAT9-222ENST00000583476 583 ntTSL 3 BASIC19.46■□□□□ 0.71
COL3A1P02461 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
COL3A1P02461 AC091544.8-201ENST00000619490 361 ntBASIC19.46■□□□□ 0.71
COL3A1P02461 AC100757.4-201ENST00000626934 759 ntBASIC19.46■□□□□ 0.71
COL3A1P02461 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC19.46■□□□□ 0.71
COL3A1P02461 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL3A1P02461 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC19.46■□□□□ 0.71
COL3A1P02461 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC19.46■□□□□ 0.71
COL3A1P02461 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC19.46■□□□□ 0.71
COL3A1P02461 AC064801.2-201ENST00000625052 1303 ntBASIC19.46■□□□□ 0.71
COL3A1P02461 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC19.46■□□□□ 0.7
COL3A1P02461 MPI-203ENST00000535694 1523 ntTSL 2 BASIC19.46■□□□□ 0.7
COL3A1P02461 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.7
COL3A1P02461 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL3A1P02461 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms