Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC15.73■□□□□ 0.11
SOX1O00570 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
SOX1O00570 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC15.73■□□□□ 0.11
SOX1O00570 SIGLEC6-204ENST00000391797 1391 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SOX1O00570 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SOX1O00570 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC15.73■□□□□ 0.11
SOX1O00570 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC15.73■□□□□ 0.11
SOX1O00570 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC15.73■□□□□ 0.11
SOX1O00570 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SOX1O00570 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SOX1O00570 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC15.72■□□□□ 0.11
SOX1O00570 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC15.72■□□□□ 0.11
SOX1O00570 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC15.72■□□□□ 0.11
SOX1O00570 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SOX1O00570 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
SOX1O00570 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC15.72■□□□□ 0.11
SOX1O00570 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SOX1O00570 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SOX1O00570 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SOX1O00570 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
SOX1O00570 AC008536.3-201ENST00000623282 1599 ntBASIC15.72■□□□□ 0.11
SOX1O00570 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SOX1O00570 SUCLA2-205ENST00000470760 1445 ntTSL 2 BASIC15.72■□□□□ 0.11
SOX1O00570 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SOX1O00570 DBNDD2-207ENST00000372722 1202 ntTSL 3 BASIC15.72■□□□□ 0.11
SOX1O00570 BAX-205ENST00000391871 687 ntTSL 5 BASIC15.72■□□□□ 0.11
SOX1O00570 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
SOX1O00570 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC15.72■□□□□ 0.11
SOX1O00570 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC15.72■□□□□ 0.11
SOX1O00570 SOD2-205ENST00000444946 917 ntTSL 2 BASIC15.72■□□□□ 0.11
SOX1O00570 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SOX1O00570 RPS18P9-201ENST00000482817 460 ntBASIC15.72■□□□□ 0.11
SOX1O00570 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC15.72■□□□□ 0.11
SOX1O00570 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC15.72■□□□□ 0.11
SOX1O00570 URB1-AS1-201ENST00000534991 831 ntBASIC15.72■□□□□ 0.11
SOX1O00570 KNOP1P1-201ENST00000542108 989 ntBASIC15.72■□□□□ 0.11
SOX1O00570 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC15.72■□□□□ 0.11
SOX1O00570 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC15.72■□□□□ 0.11
SOX1O00570 CBR3-AS1-206ENST00000608632 659 ntTSL 5 BASIC15.72■□□□□ 0.11
SOX1O00570 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC15.72■□□□□ 0.11
SOX1O00570 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
SOX1O00570 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SOX1O00570 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SOX1O00570 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC15.72■□□□□ 0.11
SOX1O00570 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC15.72■□□□□ 0.11
SOX1O00570 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SOX1O00570 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SOX1O00570 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC15.72■□□□□ 0.11
SOX1O00570 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SOX1O00570 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
SOX1O00570 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SOX1O00570 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SOX1O00570 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC15.72■□□□□ 0.11
SOX1O00570 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
SOX1O00570 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SOX1O00570 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SOX1O00570 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SOX1O00570 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SOX1O00570 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SOX1O00570 FER1L4-210ENST00000615531 5998 ntBASIC15.71■□□□□ 0.11
SOX1O00570 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC15.71■□□□□ 0.11
SOX1O00570 AL360270.3-201ENST00000609118 1348 ntBASIC15.71■□□□□ 0.11
SOX1O00570 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SOX1O00570 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC15.71■□□□□ 0.11
SOX1O00570 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC15.71■□□□□ 0.11
SOX1O00570 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
SOX1O00570 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
SOX1O00570 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SOX1O00570 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
SOX1O00570 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
SOX1O00570 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
SOX1O00570 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC15.71■□□□□ 0.11
SOX1O00570 FAM9C-202ENST00000380625 1122 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
SOX1O00570 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC15.71■□□□□ 0.11
SOX1O00570 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
SOX1O00570 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC15.71■□□□□ 0.11
SOX1O00570 AC103923.1-201ENST00000453229 1228 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SOX1O00570 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SOX1O00570 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC15.71■□□□□ 0.11
SOX1O00570 TGFBI-207ENST00000508076 1034 ntTSL 2 BASIC15.71■□□□□ 0.11
SOX1O00570 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
SOX1O00570 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC15.71■□□□□ 0.11
SOX1O00570 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SOX1O00570 KLKP1-202ENST00000597246 1125 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SOX1O00570 LINC01082-201ENST00000601250 441 ntTSL 2 BASIC15.71■□□□□ 0.11
SOX1O00570 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC15.71■□□□□ 0.11
SOX1O00570 LINC00244-201ENST00000625073 613 ntBASIC15.71■□□□□ 0.11
SOX1O00570 ST5-261ENST00000626808 1071 ntTSL 5 BASIC15.71■□□□□ 0.11
SOX1O00570 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SOX1O00570 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SOX1O00570 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC15.71■□□□□ 0.11
SOX1O00570 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC15.71■□□□□ 0.11
SOX1O00570 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
SOX1O00570 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SOX1O00570 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
SOX1O00570 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC15.71■□□□□ 0.1
SOX1O00570 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
SOX1O00570 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC15.71■□□□□ 0.1
SOX1O00570 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
SOX1O00570 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms