Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM1O00151 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM1O00151 EFR3B-205ENST00000405108 2432 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM1O00151 AC007663.2-201ENST00000506039 2228 ntTSL 2 BASIC14.46□□□□□ -0.09
PDLIM1O00151 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM1O00151 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC14.46□□□□□ -0.09
PDLIM1O00151 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM1O00151 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM1O00151 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.09
PDLIM1O00151 C1QTNF1-203ENST00000354124 2714 ntAPPRIS P1 TSL 4 BASIC14.46□□□□□ -0.09
PDLIM1O00151 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC14.46□□□□□ -0.09
PDLIM1O00151 AC007326.2-201ENST00000624224 7579 ntBASIC14.46□□□□□ -0.09
PDLIM1O00151 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM1O00151 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM1O00151 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC14.46□□□□□ -0.09
PDLIM1O00151 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC14.46□□□□□ -0.09
PDLIM1O00151 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM1O00151 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM1O00151 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM1O00151 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM1O00151 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM1O00151 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC14.46□□□□□ -0.09
PDLIM1O00151 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM1O00151 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM1O00151 LBH-203ENST00000404397 543 ntTSL 4 BASIC14.46□□□□□ -0.09
PDLIM1O00151 RPL5P21-201ENST00000404620 815 ntBASIC14.46□□□□□ -0.09
PDLIM1O00151 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC14.46□□□□□ -0.09
PDLIM1O00151 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC14.46□□□□□ -0.09
PDLIM1O00151 TSEN15P1-201ENST00000423257 515 ntBASIC14.46□□□□□ -0.09
PDLIM1O00151 KRT18P32-201ENST00000424695 1287 ntBASIC14.46□□□□□ -0.09
PDLIM1O00151 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC14.46□□□□□ -0.09
PDLIM1O00151 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC14.46□□□□□ -0.09
PDLIM1O00151 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM1O00151 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC14.46□□□□□ -0.09
PDLIM1O00151 CCDC74BP1-201ENST00000508880 1123 ntBASIC14.46□□□□□ -0.09
PDLIM1O00151 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM1O00151 SLC25A39P2-201ENST00000537614 270 ntBASIC14.46□□□□□ -0.09
PDLIM1O00151 HNRNPUP1-201ENST00000554987 333 ntBASIC14.46□□□□□ -0.09
PDLIM1O00151 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC14.46□□□□□ -0.09
PDLIM1O00151 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC14.46□□□□□ -0.09
PDLIM1O00151 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC14.46□□□□□ -0.09
PDLIM1O00151 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC14.46□□□□□ -0.09
PDLIM1O00151 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC14.46□□□□□ -0.09
PDLIM1O00151 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC14.46□□□□□ -0.09
PDLIM1O00151 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
PDLIM1O00151 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC14.46□□□□□ -0.09
PDLIM1O00151 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM1O00151 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
PDLIM1O00151 RIOK3-203ENST00000577501 1904 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM1O00151 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM1O00151 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC14.46□□□□□ -0.09
PDLIM1O00151 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
PDLIM1O00151 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM1O00151 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
PDLIM1O00151 AC018442.1-201ENST00000421439 2061 ntBASIC14.46□□□□□ -0.09
PDLIM1O00151 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
PDLIM1O00151 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC14.46□□□□□ -0.1
PDLIM1O00151 RUFY4-201ENST00000344321 2352 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.1
PDLIM1O00151 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC14.46□□□□□ -0.1
PDLIM1O00151 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC14.46□□□□□ -0.1
PDLIM1O00151 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.1
PDLIM1O00151 RNF43-202ENST00000577625 2198 ntTSL 2 BASIC14.46□□□□□ -0.1
PDLIM1O00151 AC005865.2-203ENST00000636557 2959 ntTSL 5 BASIC14.46□□□□□ -0.1
PDLIM1O00151 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
PDLIM1O00151 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC14.46□□□□□ -0.1
PDLIM1O00151 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
PDLIM1O00151 UXT-AS1-201ENST00000590504 1525 ntBASIC14.46□□□□□ -0.1
PDLIM1O00151 SF1-209ENST00000433274 2317 ntTSL 2 BASIC14.46□□□□□ -0.1
PDLIM1O00151 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
PDLIM1O00151 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
PDLIM1O00151 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC14.46□□□□□ -0.1
PDLIM1O00151 AC012349.1-201ENST00000518662 2643 ntTSL 2 BASIC14.45□□□□□ -0.1
PDLIM1O00151 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC14.45□□□□□ -0.1
PDLIM1O00151 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC14.45□□□□□ -0.1
PDLIM1O00151 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC14.45□□□□□ -0.1
PDLIM1O00151 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PDLIM1O00151 KRT18P28-201ENST00000453838 1332 ntBASIC14.45□□□□□ -0.1
PDLIM1O00151 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PDLIM1O00151 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
PDLIM1O00151 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PDLIM1O00151 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
PDLIM1O00151 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PDLIM1O00151 BIRC5-202ENST00000350051 2630 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PDLIM1O00151 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
PDLIM1O00151 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
PDLIM1O00151 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
PDLIM1O00151 AC098859.1-201ENST00000502915 1238 ntBASIC14.45□□□□□ -0.1
PDLIM1O00151 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC14.45□□□□□ -0.1
PDLIM1O00151 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC14.45□□□□□ -0.1
PDLIM1O00151 AL512356.2-201ENST00000546955 174 ntBASIC14.45□□□□□ -0.1
PDLIM1O00151 AC024267.1-201ENST00000582320 895 ntBASIC14.45□□□□□ -0.1
PDLIM1O00151 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC14.45□□□□□ -0.1
PDLIM1O00151 AL607033.1-201ENST00000623900 1599 ntBASIC14.45□□□□□ -0.1
PDLIM1O00151 IFT88-202ENST00000351808 2856 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PDLIM1O00151 GTF2IRD1P1-202ENST00000457166 2426 ntTSL 2 BASIC14.45□□□□□ -0.1
PDLIM1O00151 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC14.45□□□□□ -0.1
PDLIM1O00151 SRC-202ENST00000373558 4304 ntTSL 5 BASIC14.45□□□□□ -0.1
PDLIM1O00151 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
PDLIM1O00151 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PDLIM1O00151 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms