Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 MTHFR-210ENST00000641407 2387 ntBASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 AC145423.3-201ENST00000615987 467 ntBASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 AL603764.1-201ENST00000636452 321 ntBASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 AL390755.1-201ENST00000623716 2027 ntBASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ATG4BQ9Y4P1 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 AP001889.1-201ENST00000525414 633 ntBASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 FUZ-207ENST00000526575 482 ntTSL 4 BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 PIGL-212ENST00000581006 554 ntTSL 4 BASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms