Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
MKS1Q9NXB0 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
MKS1Q9NXB0 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC14.88□□□□□ -0.03
MKS1Q9NXB0 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
MKS1Q9NXB0 KRT8P35-201ENST00000483942 1338 ntBASIC14.88□□□□□ -0.03
MKS1Q9NXB0 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC14.88□□□□□ -0.03
MKS1Q9NXB0 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
MKS1Q9NXB0 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MKS1Q9NXB0 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MKS1Q9NXB0 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC14.88□□□□□ -0.03
MKS1Q9NXB0 TCAF1P1-201ENST00000414990 2232 ntBASIC14.88□□□□□ -0.03
MKS1Q9NXB0 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MKS1Q9NXB0 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
MKS1Q9NXB0 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MKS1Q9NXB0 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
MKS1Q9NXB0 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 AL031728.1-201ENST00000449034 2479 ntTSL 3 BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 TLE1P1-201ENST00000422965 589 ntBASIC14.87□□□□□ -0.03
MKS1Q9NXB0 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 MEIS3P1-201ENST00000495167 958 ntBASIC14.87□□□□□ -0.03
MKS1Q9NXB0 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 CBFB-203ENST00000561924 584 ntTSL 5 BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 AL603764.1-201ENST00000636452 321 ntBASIC14.87□□□□□ -0.03
MKS1Q9NXB0 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 CLK3P2-201ENST00000427566 1453 ntBASIC14.87□□□□□ -0.03
MKS1Q9NXB0 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MKS1Q9NXB0 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC14.86□□□□□ -0.03
MKS1Q9NXB0 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MKS1Q9NXB0 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
MKS1Q9NXB0 Z99774.1-201ENST00000382641 2613 ntTSL 2 BASIC14.86□□□□□ -0.03
MKS1Q9NXB0 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.86□□□□□ -0.03
MKS1Q9NXB0 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.86□□□□□ -0.03
MKS1Q9NXB0 AC130686.1-201ENST00000622936 2466 ntBASIC14.86□□□□□ -0.03
MKS1Q9NXB0 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
MKS1Q9NXB0 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
MKS1Q9NXB0 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
MKS1Q9NXB0 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
MKS1Q9NXB0 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
MKS1Q9NXB0 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
MKS1Q9NXB0 AC023794.5-201ENST00000564380 2157 ntBASIC14.86□□□□□ -0.03
MKS1Q9NXB0 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
MKS1Q9NXB0 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
MKS1Q9NXB0 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MKS1Q9NXB0 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MKS1Q9NXB0 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
MKS1Q9NXB0 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
MKS1Q9NXB0 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC14.86□□□□□ -0.03
MKS1Q9NXB0 AL022342.1-201ENST00000400363 863 ntBASIC14.86□□□□□ -0.03
MKS1Q9NXB0 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC14.86□□□□□ -0.03
MKS1Q9NXB0 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC14.86□□□□□ -0.03
MKS1Q9NXB0 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
MKS1Q9NXB0 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC14.86□□□□□ -0.03
MKS1Q9NXB0 SSH2-210ENST00000582084 560 ntTSL 3 BASIC14.86□□□□□ -0.03
MKS1Q9NXB0 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
MKS1Q9NXB0 AL121894.2-201ENST00000602977 491 ntBASIC14.86□□□□□ -0.03
MKS1Q9NXB0 AL596442.2-201ENST00000610240 980 ntBASIC14.86□□□□□ -0.03
MKS1Q9NXB0 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC14.86□□□□□ -0.03
MKS1Q9NXB0 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC14.86□□□□□ -0.03
MKS1Q9NXB0 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC14.86□□□□□ -0.03
MKS1Q9NXB0 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC14.86□□□□□ -0.03
MKS1Q9NXB0 AC215219.1-201ENST00000400706 1817 ntBASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms