Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 MIR658-201ENST00000385210 100 ntBASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 RPL8-205ENST00000527914 551 ntTSL 3 BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 RPS24-214ENST00000613865 538 ntTSL 5 BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 MIR6805-201ENST00000615055 62 ntBASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 MIR6775-201ENST00000617557 69 ntBASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
PTCHD1Q96NR3 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 AL137783.1-201ENST00000623494 1896 ntBASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 AC055811.4-201ENST00000624039 1754 ntBASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 LINC00528-201ENST00000600723 2160 ntBASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 GUK1-206ENST00000366723 845 ntTSL 5 BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 GZMB-202ENST00000382540 816 ntTSL 5 BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 USB1-202ENST00000423271 1217 ntTSL 2 BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 EIF3FP3-201ENST00000434851 1086 ntBASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 RPL7P3-201ENST00000441388 714 ntBASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 AC022210.1-201ENST00000449856 793 ntBASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 AL008721.1-201ENST00000609964 604 ntBASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 LARP4-220ENST00000615080 856 ntTSL 5 BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 WNT11-204ENST00000621122 789 ntTSL 5 BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
PTCHD1Q96NR3 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms