Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.2
CCDC42Q96M95 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC42Q96M95 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC42Q96M95 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
CCDC42Q96M95 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC42Q96M95 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC42Q96M95 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC16.33■□□□□ 0.2
CCDC42Q96M95 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC42Q96M95 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CCDC42Q96M95 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC42Q96M95 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC42Q96M95 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC42Q96M95 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC42Q96M95 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC42Q96M95 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CCDC42Q96M95 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC42Q96M95 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC42Q96M95 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC42Q96M95 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
CCDC42Q96M95 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC42Q96M95 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC16.32■□□□□ 0.2
CCDC42Q96M95 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC16.32■□□□□ 0.2
CCDC42Q96M95 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC42Q96M95 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC42Q96M95 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
CCDC42Q96M95 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC16.32■□□□□ 0.2
CCDC42Q96M95 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC16.32■□□□□ 0.2
CCDC42Q96M95 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC42Q96M95 DHDH-204ENST00000523250 634 ntTSL 5 BASIC16.32■□□□□ 0.2
CCDC42Q96M95 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC16.32■□□□□ 0.2
CCDC42Q96M95 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC16.32■□□□□ 0.2
CCDC42Q96M95 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC16.32■□□□□ 0.2
CCDC42Q96M95 VPS29-207ENST00000549970 818 ntTSL 3 BASIC16.32■□□□□ 0.2
CCDC42Q96M95 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC42Q96M95 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC16.32■□□□□ 0.2
CCDC42Q96M95 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.32■□□□□ 0.2
CCDC42Q96M95 AC044860.1-202ENST00000559481 777 ntBASIC16.32■□□□□ 0.2
CCDC42Q96M95 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC42Q96M95 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC42Q96M95 MX1-218ENST00000619682 1980 ntTSL 5 BASIC16.32■□□□□ 0.2
CCDC42Q96M95 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC16.32■□□□□ 0.2
CCDC42Q96M95 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC16.32■□□□□ 0.2
CCDC42Q96M95 RAB34-223ENST00000636154 730 ntTSL 2 BASIC16.32■□□□□ 0.2
CCDC42Q96M95 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC42Q96M95 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC42Q96M95 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC42Q96M95 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC16.32■□□□□ 0.2
CCDC42Q96M95 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CCDC42Q96M95 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC42Q96M95 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC16.32■□□□□ 0.2
CCDC42Q96M95 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC42Q96M95 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC42Q96M95 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC42Q96M95 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC42Q96M95 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC42Q96M95 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC42Q96M95 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC42Q96M95 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC42Q96M95 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC42Q96M95 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
CCDC42Q96M95 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC42Q96M95 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC16.31■□□□□ 0.2
CCDC42Q96M95 AL354702.1-201ENST00000442006 1960 ntBASIC16.31■□□□□ 0.2
CCDC42Q96M95 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC42Q96M95 AL137783.1-201ENST00000623494 1896 ntBASIC16.31■□□□□ 0.2
CCDC42Q96M95 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC16.31■□□□□ 0.2
CCDC42Q96M95 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC16.31■□□□□ 0.2
CCDC42Q96M95 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC42Q96M95 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC16.31■□□□□ 0.2
CCDC42Q96M95 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC16.31■□□□□ 0.2
CCDC42Q96M95 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC42Q96M95 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC42Q96M95 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC42Q96M95 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC42Q96M95 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC16.31■□□□□ 0.2
CCDC42Q96M95 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC42Q96M95 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
CCDC42Q96M95 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC42Q96M95 SUN1-204ENST00000403868 978 ntTSL 2 BASIC16.31■□□□□ 0.2
CCDC42Q96M95 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC16.31■□□□□ 0.2
CCDC42Q96M95 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC16.31■□□□□ 0.2
CCDC42Q96M95 HLA-J-203ENST00000494367 1087 ntBASIC16.31■□□□□ 0.2
CCDC42Q96M95 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CCDC42Q96M95 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC16.31■□□□□ 0.2
CCDC42Q96M95 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC16.31■□□□□ 0.2
CCDC42Q96M95 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
CCDC42Q96M95 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC42Q96M95 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC42Q96M95 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC42Q96M95 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC42Q96M95 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
CCDC42Q96M95 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC42Q96M95 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC42Q96M95 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC42Q96M95 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC42Q96M95 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC42Q96M95 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC42Q96M95 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC16.3■□□□□ 0.2
CCDC42Q96M95 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC42Q96M95 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms