Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC14.85□□□□□ -0.03
TTC28Q96AY4 AL080250.1-203ENST00000607799 747 ntTSL 2 BASIC14.85□□□□□ -0.03
TTC28Q96AY4 AC106785.2-201ENST00000564385 1319 ntBASIC14.85□□□□□ -0.03
TTC28Q96AY4 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TTC28Q96AY4 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
TTC28Q96AY4 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TTC28Q96AY4 AP002353.1-201ENST00000528257 1599 ntBASIC14.85□□□□□ -0.03
TTC28Q96AY4 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC14.85□□□□□ -0.03
TTC28Q96AY4 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC14.85□□□□□ -0.03
TTC28Q96AY4 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
TTC28Q96AY4 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TTC28Q96AY4 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC14.85□□□□□ -0.03
TTC28Q96AY4 AIG1-203ENST00000367596 559 ntTSL 2 BASIC14.85□□□□□ -0.03
TTC28Q96AY4 S100A2-202ENST00000368708 998 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TTC28Q96AY4 SUMO1-202ENST00000392245 1071 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
TTC28Q96AY4 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC14.85□□□□□ -0.03
TTC28Q96AY4 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC14.85□□□□□ -0.03
TTC28Q96AY4 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
TTC28Q96AY4 RN7SL87P-201ENST00000497657 288 ntBASIC14.85□□□□□ -0.03
TTC28Q96AY4 AC004923.3-201ENST00000527532 355 ntBASIC14.85□□□□□ -0.03
TTC28Q96AY4 SULT1A3-206ENST00000563322 906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TTC28Q96AY4 SULT1A4-204ENST00000565290 906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TTC28Q96AY4 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC14.85□□□□□ -0.03
TTC28Q96AY4 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
TTC28Q96AY4 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TTC28Q96AY4 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TTC28Q96AY4 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TTC28Q96AY4 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
TTC28Q96AY4 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC14.84□□□□□ -0.03
TTC28Q96AY4 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
TTC28Q96AY4 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC14.84□□□□□ -0.03
TTC28Q96AY4 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC14.84□□□□□ -0.03
TTC28Q96AY4 APOBEC3B-204ENST00000407298 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
TTC28Q96AY4 PPP1R2P4-201ENST00000424051 595 ntBASIC14.84□□□□□ -0.03
TTC28Q96AY4 AP002856.3-201ENST00000441665 635 ntTSL 3 BASIC14.84□□□□□ -0.03
TTC28Q96AY4 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
TTC28Q96AY4 DPY19L2P4-201ENST00000479881 442 ntBASIC14.84□□□□□ -0.03
TTC28Q96AY4 SNHG4-204ENST00000507197 865 ntTSL 2 BASIC14.84□□□□□ -0.03
TTC28Q96AY4 AC004801.1-201ENST00000549557 360 ntBASIC14.84□□□□□ -0.03
TTC28Q96AY4 GRAMD4P6-201ENST00000556999 244 ntBASIC14.84□□□□□ -0.03
TTC28Q96AY4 AC087741.1-205ENST00000572730 750 ntTSL 3 BASIC14.84□□□□□ -0.03
TTC28Q96AY4 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC14.84□□□□□ -0.03
TTC28Q96AY4 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC14.84□□□□□ -0.03
TTC28Q96AY4 BX322534.1-201ENST00000635574 241 ntBASIC14.84□□□□□ -0.03
TTC28Q96AY4 AC215524.1-201ENST00000635696 241 ntBASIC14.84□□□□□ -0.03
TTC28Q96AY4 CES3-203ENST00000543856 3178 ntTSL 2 BASIC14.84□□□□□ -0.03
TTC28Q96AY4 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC14.84□□□□□ -0.03
TTC28Q96AY4 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TTC28Q96AY4 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TTC28Q96AY4 AC078925.2-201ENST00000624013 1973 ntBASIC14.84□□□□□ -0.03
TTC28Q96AY4 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
TTC28Q96AY4 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
TTC28Q96AY4 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TTC28Q96AY4 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TTC28Q96AY4 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
TTC28Q96AY4 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TTC28Q96AY4 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC14.84□□□□□ -0.03
TTC28Q96AY4 AC011997.1-201ENST00000409845 1032 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
TTC28Q96AY4 AL590399.1-204ENST00000430302 781 ntTSL 5 BASIC14.84□□□□□ -0.03
TTC28Q96AY4 OR2A1-AS1-203ENST00000468575 568 ntBASIC14.84□□□□□ -0.03
TTC28Q96AY4 AC025594.1-201ENST00000469533 543 ntBASIC14.84□□□□□ -0.03
TTC28Q96AY4 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC14.84□□□□□ -0.03
TTC28Q96AY4 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC14.84□□□□□ -0.03
TTC28Q96AY4 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
TTC28Q96AY4 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC14.84□□□□□ -0.03
TTC28Q96AY4 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC14.84□□□□□ -0.03
TTC28Q96AY4 BANP-227ENST00000626016 2144 ntTSL 2 BASIC14.84□□□□□ -0.03
TTC28Q96AY4 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
TTC28Q96AY4 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
TTC28Q96AY4 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
TTC28Q96AY4 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC14.83□□□□□ -0.03
TTC28Q96AY4 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
TTC28Q96AY4 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
TTC28Q96AY4 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
TTC28Q96AY4 AL513523.2-202ENST00000427283 2040 ntBASIC14.83□□□□□ -0.03
TTC28Q96AY4 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
TTC28Q96AY4 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC14.83□□□□□ -0.03
TTC28Q96AY4 TEKT4P2-202ENST00000559466 1312 ntBASIC14.83□□□□□ -0.04
TTC28Q96AY4 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
TTC28Q96AY4 CYB5R2-201ENST00000299498 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
TTC28Q96AY4 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
TTC28Q96AY4 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC14.83□□□□□ -0.04
TTC28Q96AY4 FAM21EP-201ENST00000417804 985 ntBASIC14.83□□□□□ -0.04
TTC28Q96AY4 GALP-202ENST00000440823 889 ntTSL 5 BASIC14.83□□□□□ -0.04
TTC28Q96AY4 LINC01833-204ENST00000444871 581 ntTSL 3 BASIC14.83□□□□□ -0.04
TTC28Q96AY4 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
TTC28Q96AY4 C11orf45-202ENST00000524878 609 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
TTC28Q96AY4 EHF-205ENST00000527935 557 ntTSL 2 BASIC14.83□□□□□ -0.04
TTC28Q96AY4 PDCD2-205ENST00000537445 1114 ntTSL 3 BASIC14.83□□□□□ -0.04
TTC28Q96AY4 DLK1-205ENST00000556051 469 ntTSL 2 BASIC14.83□□□□□ -0.04
TTC28Q96AY4 AC116025.1-201ENST00000575404 415 ntTSL 3 BASIC14.83□□□□□ -0.04
TTC28Q96AY4 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
TTC28Q96AY4 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC14.83□□□□□ -0.04
TTC28Q96AY4 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
TTC28Q96AY4 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
TTC28Q96AY4 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
TTC28Q96AY4 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
TTC28Q96AY4 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
TTC28Q96AY4 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC14.83□□□□□ -0.04
TTC28Q96AY4 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms