Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC18.56■□□□□ 0.56
SYNE4Q8N205 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SYNE4Q8N205 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SYNE4Q8N205 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SYNE4Q8N205 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
SYNE4Q8N205 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SYNE4Q8N205 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
SYNE4Q8N205 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SYNE4Q8N205 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
SYNE4Q8N205 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC18.56■□□□□ 0.56
SYNE4Q8N205 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SYNE4Q8N205 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SYNE4Q8N205 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SYNE4Q8N205 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
SYNE4Q8N205 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SYNE4Q8N205 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SYNE4Q8N205 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SYNE4Q8N205 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SYNE4Q8N205 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SYNE4Q8N205 API5-203ENST00000455725 2257 ntTSL 2 BASIC18.56■□□□□ 0.56
SYNE4Q8N205 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
SYNE4Q8N205 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
SYNE4Q8N205 SLC9A7P1-201ENST00000554295 3311 ntBASIC18.56■□□□□ 0.56
SYNE4Q8N205 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC18.55■□□□□ 0.56
SYNE4Q8N205 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE4Q8N205 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE4Q8N205 CYP4F23P-201ENST00000593402 1579 ntBASIC18.55■□□□□ 0.56
SYNE4Q8N205 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SYNE4Q8N205 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE4Q8N205 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE4Q8N205 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE4Q8N205 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC18.55■□□□□ 0.56
SYNE4Q8N205 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC18.55■□□□□ 0.56
SYNE4Q8N205 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
SYNE4Q8N205 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE4Q8N205 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE4Q8N205 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
SYNE4Q8N205 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC18.55■□□□□ 0.56
SYNE4Q8N205 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC18.55■□□□□ 0.56
SYNE4Q8N205 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE4Q8N205 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE4Q8N205 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE4Q8N205 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
SYNE4Q8N205 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
SYNE4Q8N205 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE4Q8N205 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC18.55■□□□□ 0.56
SYNE4Q8N205 IGLV3-15-201ENST00000518356 244 ntBASIC18.55■□□□□ 0.56
SYNE4Q8N205 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
SYNE4Q8N205 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
SYNE4Q8N205 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC18.55■□□□□ 0.56
SYNE4Q8N205 AC008825.2-201ENST00000603374 718 ntBASIC18.55■□□□□ 0.56
SYNE4Q8N205 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC18.55■□□□□ 0.56
SYNE4Q8N205 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC18.55■□□□□ 0.56
SYNE4Q8N205 RPL35-206ENST00000629845 340 ntTSL 5 BASIC18.55■□□□□ 0.56
SYNE4Q8N205 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC18.55■□□□□ 0.56
SYNE4Q8N205 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE4Q8N205 ING5-213ENST00000636051 4199 ntTSL 5 BASIC18.55■□□□□ 0.56
SYNE4Q8N205 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE4Q8N205 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC18.55■□□□□ 0.56
SYNE4Q8N205 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE4Q8N205 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE4Q8N205 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SYNE4Q8N205 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC18.55■□□□□ 0.56
SYNE4Q8N205 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE4Q8N205 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
SYNE4Q8N205 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SYNE4Q8N205 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC18.55■□□□□ 0.56
SYNE4Q8N205 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SYNE4Q8N205 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC18.55■□□□□ 0.56
SYNE4Q8N205 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE4Q8N205 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC18.55■□□□□ 0.56
SYNE4Q8N205 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE4Q8N205 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE4Q8N205 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SYNE4Q8N205 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SYNE4Q8N205 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC18.54■□□□□ 0.56
SYNE4Q8N205 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
SYNE4Q8N205 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
SYNE4Q8N205 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC18.54■□□□□ 0.56
SYNE4Q8N205 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC18.54■□□□□ 0.56
SYNE4Q8N205 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SYNE4Q8N205 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC18.54■□□□□ 0.56
SYNE4Q8N205 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SYNE4Q8N205 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SYNE4Q8N205 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SYNE4Q8N205 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SYNE4Q8N205 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC18.54■□□□□ 0.56
SYNE4Q8N205 FGFR3P1-201ENST00000449999 601 ntBASIC18.54■□□□□ 0.56
SYNE4Q8N205 AL353637.1-201ENST00000451571 732 ntBASIC18.54■□□□□ 0.56
SYNE4Q8N205 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC18.54■□□□□ 0.56
SYNE4Q8N205 GCOM2-201ENST00000509133 1104 ntBASIC18.54■□□□□ 0.56
SYNE4Q8N205 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC18.54■□□□□ 0.56
SYNE4Q8N205 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC18.54■□□□□ 0.56
SYNE4Q8N205 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC18.54■□□□□ 0.56
SYNE4Q8N205 AC131206.1-201ENST00000538078 1211 ntBASIC18.54■□□□□ 0.56
SYNE4Q8N205 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
SYNE4Q8N205 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
SYNE4Q8N205 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SYNE4Q8N205 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SYNE4Q8N205 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms