Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS53Q5VIR6 KRT8P14-201ENST00000414254 1442 ntBASIC18.23■□□□□ 0.51
VPS53Q5VIR6 TP73-213ENST00000604479 1623 ntTSL 5 BASIC18.23■□□□□ 0.51
VPS53Q5VIR6 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS53Q5VIR6 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
VPS53Q5VIR6 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC18.23■□□□□ 0.51
VPS53Q5VIR6 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
VPS53Q5VIR6 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS53Q5VIR6 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS53Q5VIR6 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS53Q5VIR6 COCH-203ENST00000460581 2688 ntTSL 2 BASIC18.23■□□□□ 0.51
VPS53Q5VIR6 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS53Q5VIR6 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
VPS53Q5VIR6 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS53Q5VIR6 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
VPS53Q5VIR6 AL645937.2-201ENST00000396808 931 ntBASIC18.23■□□□□ 0.51
VPS53Q5VIR6 PGGT1BP2-201ENST00000398621 1028 ntBASIC18.23■□□□□ 0.51
VPS53Q5VIR6 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
VPS53Q5VIR6 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC18.23■□□□□ 0.51
VPS53Q5VIR6 BCRP2-202ENST00000447763 634 ntBASIC18.23■□□□□ 0.51
VPS53Q5VIR6 BCRP6-201ENST00000510112 632 ntBASIC18.23■□□□□ 0.51
VPS53Q5VIR6 BCRP7-201ENST00000511549 544 ntBASIC18.23■□□□□ 0.51
VPS53Q5VIR6 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC18.23■□□□□ 0.51
VPS53Q5VIR6 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VPS53Q5VIR6 PTP4A1P2-201ENST00000546033 454 ntBASIC18.23■□□□□ 0.51
VPS53Q5VIR6 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC18.23■□□□□ 0.51
VPS53Q5VIR6 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC18.23■□□□□ 0.51
VPS53Q5VIR6 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VPS53Q5VIR6 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
VPS53Q5VIR6 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VPS53Q5VIR6 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS53Q5VIR6 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VPS53Q5VIR6 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC18.23■□□□□ 0.51
VPS53Q5VIR6 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS53Q5VIR6 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS53Q5VIR6 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
VPS53Q5VIR6 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS53Q5VIR6 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS53Q5VIR6 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC18.23■□□□□ 0.51
VPS53Q5VIR6 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC18.23■□□□□ 0.51
VPS53Q5VIR6 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC18.22■□□□□ 0.51
VPS53Q5VIR6 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VPS53Q5VIR6 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS53Q5VIR6 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS53Q5VIR6 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS53Q5VIR6 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC18.22■□□□□ 0.51
VPS53Q5VIR6 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS53Q5VIR6 LILRP1-201ENST00000444199 1370 ntBASIC18.22■□□□□ 0.51
VPS53Q5VIR6 AC018665.1-201ENST00000622927 1362 ntBASIC18.22■□□□□ 0.51
VPS53Q5VIR6 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS53Q5VIR6 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS53Q5VIR6 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VPS53Q5VIR6 LSM5-207ENST00000410044 687 ntTSL 3 BASIC18.22■□□□□ 0.51
VPS53Q5VIR6 CROCCP4-201ENST00000457096 498 ntBASIC18.22■□□□□ 0.51
VPS53Q5VIR6 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC18.22■□□□□ 0.51
VPS53Q5VIR6 NAA50-208ENST00000497255 789 ntTSL 5 BASIC18.22■□□□□ 0.51
VPS53Q5VIR6 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC18.22■□□□□ 0.51
VPS53Q5VIR6 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC18.22■□□□□ 0.51
VPS53Q5VIR6 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VPS53Q5VIR6 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC18.22■□□□□ 0.51
VPS53Q5VIR6 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS53Q5VIR6 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC18.22■□□□□ 0.51
VPS53Q5VIR6 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
VPS53Q5VIR6 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
VPS53Q5VIR6 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS53Q5VIR6 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS53Q5VIR6 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
VPS53Q5VIR6 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS53Q5VIR6 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS53Q5VIR6 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC18.22■□□□□ 0.51
VPS53Q5VIR6 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
VPS53Q5VIR6 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
VPS53Q5VIR6 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS53Q5VIR6 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
VPS53Q5VIR6 KRT8P35-201ENST00000483942 1338 ntBASIC18.22■□□□□ 0.51
VPS53Q5VIR6 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
VPS53Q5VIR6 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC18.22■□□□□ 0.51
VPS53Q5VIR6 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC18.22■□□□□ 0.51
VPS53Q5VIR6 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC18.21■□□□□ 0.51
VPS53Q5VIR6 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC18.21■□□□□ 0.51
VPS53Q5VIR6 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS53Q5VIR6 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC18.21■□□□□ 0.51
VPS53Q5VIR6 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
VPS53Q5VIR6 PCDHA3-202ENST00000532566 4594 ntBASIC18.21■□□□□ 0.51
VPS53Q5VIR6 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS53Q5VIR6 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC18.21■□□□□ 0.51
VPS53Q5VIR6 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VPS53Q5VIR6 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
VPS53Q5VIR6 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS53Q5VIR6 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS53Q5VIR6 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
VPS53Q5VIR6 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS53Q5VIR6 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VPS53Q5VIR6 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS53Q5VIR6 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS53Q5VIR6 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC18.21■□□□□ 0.51
VPS53Q5VIR6 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC18.21■□□□□ 0.51
VPS53Q5VIR6 AC092933.1-201ENST00000393644 945 ntBASIC18.21■□□□□ 0.51
VPS53Q5VIR6 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
VPS53Q5VIR6 ACTBP8-201ENST00000403258 1108 ntBASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms