Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC14.88□□□□□ -0.03
PKNOX1P55347 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PKNOX1P55347 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
PKNOX1P55347 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC14.88□□□□□ -0.03
PKNOX1P55347 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
PKNOX1P55347 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC14.88□□□□□ -0.03
PKNOX1P55347 AC018442.1-201ENST00000421439 2061 ntBASIC14.88□□□□□ -0.03
PKNOX1P55347 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC14.88□□□□□ -0.03
PKNOX1P55347 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC14.88□□□□□ -0.03
PKNOX1P55347 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PKNOX1P55347 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
PKNOX1P55347 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PKNOX1P55347 AL137784.3-201ENST00000623858 2288 ntBASIC14.87□□□□□ -0.03
PKNOX1P55347 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PKNOX1P55347 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
PKNOX1P55347 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PKNOX1P55347 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PKNOX1P55347 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PKNOX1P55347 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
PKNOX1P55347 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC14.87□□□□□ -0.03
PKNOX1P55347 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.87□□□□□ -0.03
PKNOX1P55347 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
PKNOX1P55347 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PKNOX1P55347 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
PKNOX1P55347 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PKNOX1P55347 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC14.87□□□□□ -0.03
PKNOX1P55347 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC14.87□□□□□ -0.03
PKNOX1P55347 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
PKNOX1P55347 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PKNOX1P55347 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PKNOX1P55347 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC14.87□□□□□ -0.03
PKNOX1P55347 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC14.87□□□□□ -0.03
PKNOX1P55347 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
PKNOX1P55347 AC114501.2-201ENST00000439631 535 ntBASIC14.87□□□□□ -0.03
PKNOX1P55347 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PKNOX1P55347 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.87□□□□□ -0.03
PKNOX1P55347 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC14.87□□□□□ -0.03
PKNOX1P55347 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PKNOX1P55347 CALM1-205ENST00000553542 877 ntTSL 5 BASIC14.87□□□□□ -0.03
PKNOX1P55347 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC14.87□□□□□ -0.03
PKNOX1P55347 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
PKNOX1P55347 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC14.87□□□□□ -0.03
PKNOX1P55347 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC14.87□□□□□ -0.03
PKNOX1P55347 INO80C-210ENST00000590757 595 ntTSL 2 BASIC14.87□□□□□ -0.03
PKNOX1P55347 TEX48-202ENST00000612244 662 ntTSL 3 BASIC14.87□□□□□ -0.03
PKNOX1P55347 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
PKNOX1P55347 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC14.87□□□□□ -0.03
PKNOX1P55347 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PKNOX1P55347 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PKNOX1P55347 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC14.87□□□□□ -0.03
PKNOX1P55347 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PKNOX1P55347 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
PKNOX1P55347 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PKNOX1P55347 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
PKNOX1P55347 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PKNOX1P55347 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
PKNOX1P55347 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC14.87□□□□□ -0.03
PKNOX1P55347 SF1-209ENST00000433274 2317 ntTSL 2 BASIC14.87□□□□□ -0.03
PKNOX1P55347 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PKNOX1P55347 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
PKNOX1P55347 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PKNOX1P55347 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PKNOX1P55347 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC14.87□□□□□ -0.03
PKNOX1P55347 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.87□□□□□ -0.03
PKNOX1P55347 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PKNOX1P55347 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
PKNOX1P55347 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
PKNOX1P55347 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PKNOX1P55347 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PKNOX1P55347 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PKNOX1P55347 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC14.86□□□□□ -0.03
PKNOX1P55347 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
PKNOX1P55347 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PKNOX1P55347 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PKNOX1P55347 BEND3P1-201ENST00000421591 1944 ntBASIC14.86□□□□□ -0.03
PKNOX1P55347 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PKNOX1P55347 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PKNOX1P55347 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PKNOX1P55347 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PKNOX1P55347 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PKNOX1P55347 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PKNOX1P55347 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PKNOX1P55347 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC14.86□□□□□ -0.03
PKNOX1P55347 KRT18P13-201ENST00000400056 1290 ntBASIC14.86□□□□□ -0.03
PKNOX1P55347 SUN1-204ENST00000403868 978 ntTSL 2 BASIC14.86□□□□□ -0.03
PKNOX1P55347 AC092580.3-201ENST00000430932 139 ntBASIC14.86□□□□□ -0.03
PKNOX1P55347 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC14.86□□□□□ -0.03
PKNOX1P55347 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC14.86□□□□□ -0.03
PKNOX1P55347 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC14.86□□□□□ -0.03
PKNOX1P55347 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC14.86□□□□□ -0.03
PKNOX1P55347 LSM12-202ENST00000585388 942 ntTSL 3 BASIC14.86□□□□□ -0.03
PKNOX1P55347 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC14.86□□□□□ -0.03
PKNOX1P55347 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PKNOX1P55347 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC14.86□□□□□ -0.03
PKNOX1P55347 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PKNOX1P55347 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
PKNOX1P55347 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC14.86□□□□□ -0.03
PKNOX1P55347 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PKNOX1P55347 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PKNOX1P55347 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms